Table 1 Basic information of LcCCO gene family
LcCOO genes | Gene ID in genome | Genomic position | Number of amino Acids (aa) | MW (KDa) | pI | Instability index | Aliphatic index | Grand average of hydropathicity | Subcellular localization prediction |
|---|---|---|---|---|---|---|---|---|---|
LcCCD1 | LITCHI004397.m1 | Chr14:923,933–940,844 | 1434 | 162.43 | 6.12 | 35.41 | 84.62 | -0.231 | Chloroplast |
LcCCDlike-a | LITCHI017175.m1 | Chr1:43,820,531–43,837,433 | 1172 | 131.99 | 5.54 | 36.52 | 75.61 | -0.314 | Cytoplasm |
LcCCDlike-b | LITCHI001770.m1 | Chr5:30,309,771–30,311,628 | 359 | 40.68 | 5.90 | 29.50 | 80.56 | -0.179 | Cytoplasm |
LcCCD4 | LITCHI017848.m1 | Chr15:133,065–136,343 | 589 | 64.70 | 6.65 | 42.13 | 80.44 | -0.202 | Chloroplast |
LcCCD4a1 | LITCHI000409.m1 | Chr5:11,437,371–11,439,125 | 584 | 65.72 | 7.23 | 49.31 | 80.77 | -0.142 | Chloroplast |
LcCCD4a2 | LITCHI000415.m1 | Chr5;11,580,107–11,582,498 | 584 | 65.70 | 7.23 | 48.84 | 82.11 | -0.099 | Chloroplast |
LcCCD4b | LITCHI000422.m1 | Chr5;11,719,278–11,721,297 | 577 | 64.97 | 8.15 | 46.41 | 81.56 | -0.182 | Chloroplast |
LcCCD4c1 | LITCHI015832.m1 | Chr1;19,365,348–19,366,692 | 303 | 34.23 | 6.37 | 39.62 | 80.03 | -0.230 | Cytoplasm |
LcCCD4c2 | LITCHI015831.m1 | Chr1;19,334,658–19,337,656 | 566 | 62.63 | 6.48 | 31.10 | 81.64 | -0.277 | Chloroplast |
LcCCD7 | LITCHI006417.m1 | Chr11;1,151,592–1,157,255 | 628 | 70.57 | 7.27 | 49.75 | 80.51 | -0.269 | Chloroplast |
LcCCD8a | LITCHI006516.m1 | Chr11;1,903,352–1,906,489 | 548 | 61.54 | 6.28 | 42.19 | 76.17 | -0.426 | Chloroplast |
LcCCD8b | LITCHI017183.m1 | Chr1;43,942,769–43,947,076 | 566 | 62.63 | 6.48 | 31.10 | 81.64 | -0.277 | Mitochondrion |
LcNCED1 | LITCHI012579.m1 | Chr2;12,609,603–12,614,092 | 596 | 66.73 | 6.82 | 47.43 | 77.03 | -0.389 | Chloroplast |
LcNCED2 | LITCHI028785.m1 | Chr9;17,432,409–17,435,810 | 598 | 66.85 | 6.51 | 43.21 | 80.87 | -0.300 | Chloroplast |
LcNCED3 | LITCHI015114.m1 | Chr1;8,869,747–8,872,765 | 601 | 67.21 | 6.95 | 40.23 | 82.63 | -0.331 | Chloroplast |