Table 1 RNA-Seq paired-read counts for all samples used for de novo assembly
sample name | read counts | mapped paired-read (%) | mapped paired-read (ORFa) (%) |
|---|---|---|---|
leaf-1 | 7,638,583 | 98.9 | 65.9 |
leaf-2 | 6,666,534 | 98.8 | 65.2 |
root-1 | 8,239,930 | 99.0 | 67.2 |
root-2 | 6,675,989 | 98.9 | 67.8 |
0a-1 | 8,245,866 | 99.0 | 67.3 |
0a-2 | 6,816,171 | 99.0 | 65.8 |
0a-3 | 7,092,896 | 99.1 | 66.9 |
0b-1 | 7,597,324 | 98.9 | 66.5 |
0b-2 | 7,038,414 | 99.0 | 67.7 |
0b-3 | 6,752,651 | 99.0 | 67.2 |
1a-1 | 7,160,555 | 98.9 | 66.5 |
1a-2 | 6,522,547 | 99.0 | 67.0 |
1a-3 | 5,658,138 | 99.0 | 67.4 |
1b-1 | 7,993,239 | 99.0 | 68.4 |
1b-2 | 6,991,590 | 99.0 | 68.3 |
1b-3 | 6,333,466 | 99.0 | 68.8 |
total | 113,423,893 | Â | Â |