Table 1 Hypothetical RNA targets of chloroplastic PPR proteins of A. angustifolia
Transcript ID | Regular expression | RNA targets | RNA target sequence |
|---|---|---|---|
AaPPR1 | U[AU]UUU[AU]U[CAU][AC]U[AU]UU[ACGU][ACGU] | ycf1 (CDS) | 5′-UAUUUUUCAUUUUCA-3’ |
AaPPR2 | [ACGU][ACGU][UCG][AU][UCG][UCG]A[UCG]G[UCG][AU]GAU[ACGU] | rpoC1 (intron) | 5′-UCUUUUAGGGAGAUA-3’ |
rps12* (intron) | 5′-GCUUGGAGGGAGAUC-3’ | ||
AaPPR5 | [ACGU][CG]A[AU]GAAAA[AU]G[ACGU][AU]A[ACGU][GU] | trnK-UUU (intron) | 5′-AGAAGAAAAUGGAAUU-3’ |
AaPPR6 | [UC][GC][GC]A[CU][CA]UAG[GU] | rps16 (intron) | 5′-UCGACAUAGU-3’ |
petN (CDS) | 5′-UGGAUAUAGU-3’ | ||
atpE (CDS) | 5′-UGGAUAUAGG-3’ | ||
AaPPR10 | [ACGU]C[ACGU]UUCC[ACGU]CC | rpoC1 (CDS) | 5′-UCCUUCCUCC-3’ |
psbC (CDS) | 5′-GCGUUCCCCC-3’ | ||
petA (CDS) | 5′-UCUUUCCCCC-3’ | ||
rrn23* (exon) | 5′-GCGUUCCGCC-3’ | ||
AaPPR11 | [UC][UC][ACGU]A[ACGU]U[ACGU][ACGU][ACGU][ACGU][ACGU][ACGU]C[ACGU][UC]UCUU[CU]U | ycf2* (CDS) | 5′-UUCAAUCCUUUUCCUUCUUCU-3’ |
AaPPR13 | [GU][ACGU][ACGU]C[ACGU][ACGU]G[ACGU][ACGU][ACGU]AUGU | atpA (CDS) | 5′-UAUCCAGGAGAUGU-3’ |
rps14 (CDS) | 5′-UGGCAAGAAAAUGU-3’ | ||
trnI-GAU* (intron) | 5′-UGACCCGGAGAUGU-3’ | ||
ycf1 (CDS) | 5′-UCUCAAGCAUAUGU-3’ | ||
AaPPR15 | UUG[CU]CGC | rbcL (CDS) | 5′-UUGCCGC-3’ |
rpl33 (CDS) | 5′-UUGUCGC-3’ | ||
AaPPR18 | UC[GC]UAU[AU][CU][ACGU]G | ycf2* (CDS) | 5′-UCCUAUACGG-3’ |
psbD (CDS) | 5′-UCCUAUUUGG-3’ | ||
psbC (CDS) | 5′-UCGUAUUCUG-3’ | ||
psaB (CDS) | 5′-UCGUAUUUGG-3’ | ||
ndhG (CDS) | 5′-UCCUAUUUUG-3’ |