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Table 1 Comprehensive list of miRNAs involved in rice immunity against pathogens and herbivores

From: MicroRNA-mediated host defense mechanisms against pathogens and herbivores in rice: balancing gains from genetic resistance with trade-offs to productivity potential

Organisms

MicroRNAs

Target genes

Regulation

Pathogens/ herbivores

References

Fungus

Osa-miR156fhl-3p

OsSPL14

Negative

M. oryzae

[23]

Osa-miR159a

OsGAMYB

Positive

M. oryzae

[24]

Osa-miR160a

ARF16

Positive

M. oryzae

[25]

Osa-miR162a

OsDCL1

Positive

M. oryzae

[26]

Osa-miR164a

OsNAC60

Negative

M. oryzae,

R. solani

[27]

Osa-miR166k-166 h

EIN 2

Positive

M. oryzae,

F. fujikuroi

[28]

Osa-miR167d

ARF12

Negative

M. oryzae

[29]

Osa-miR169

NF-YA

Negative

M. oryzae

[30]

Osa-miR319

OsTCP21

Negative

M. oryzae

[31]

Osa-miR396

OsGRFs

Negative

M. oryzae

[32]

Osa-miR398b

SOD

Positive

M. oryzae

[33]

Osa-miR439a

Defense-related genes

Negative

M. oryzae

[34]

Osa-miR444

MADS

Negative

M. oryzae

[35]

Osa-miR530

HDFR-TS

Negative

M. oryzae

[36]

Osa-miR1432

OsEFH1

Negative

M. oryzae

[37]

Osa-miR1871

OsMFAP1

Negative

M. oryzae

[38]

Osa-miR1873

LOC_Os05g01790

Negative

M. oryzae

[39]

Osa-miR7695

OsNramp6

Positive

M. oryzae

[40]

Bacteria

Osa-miR156

OsSPLs

Negative

X. oryzae

[41]

Osa-miR159b

OsGAMYB

Positive

X. oryzae

[42]

Osa-miR164a

OsNAC60

Negative

X. oryzae

[42]

Osa-miR167d-5p

OsWD40–174

Negative

X. oryzae

[42]

Osa-miR169o

NF-YA

Negative

X. oryzae

[43]

Osa-miR396f

OsGRFs

Positive

Dickeya zeae

[44]

Viruses

Osa-miR168

AGO1

Positive

RSV

[45]

Osa-miR171b

OsSCL6-II

Negative

RSV

[46]

Osa-miR319

OsTCP21

Negative

RRSV

[47]

Osa-miR444

MADS Box

Positive

RSV

[48]

Osa-miR528

L-ascorbate oxidase

Negative

RSV

[49, 50]

Herbivores

Osa-miR156

OsMPKs

Negative

BPH

[51]

Osa-miR396

OsGRF8

Negative

BPH

[52]

  1. OsSPL- SQUAMOSA promoter-binding protein-like transcription factor; ARF- Auxin responsive factor; DCL- Dicer-like, EIN- Ethylene insensitive; NF-YA- Nuclear Factor Y-A; OsTCP- Teosinte branched/Cycloidea/Proliferating cell factor; OsGRF- Growth regulating factors; SOD- Superoxide dismutase, DHFR-TS - Dihydrofolate reductase/thymidylate synthase; OsEFH1- EF-hand family protein 1; OsMFAP1- Microfibrillar-associated protein 1; OsNramp- Natural resistance-associated macrophage pathogen, AGO- ARGONAUTE 1; OsSCL- Scarecrow-like; RSV- Rice stripe virus; RRSV- Rice ragged stunt virus; BPH-Brown planthopper