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Table 2 Co-localization of candidate genes revealed using the combined GWAS and QTL analysis

From: Linkage mapping combined with GWAS revealed the genetic structural relationship and candidate genes of maize flowering time-related traits

Traits QTL SNP Chr Allele P value Gene Annotation
HfDTA qHfLB1-1 chr1.S_19944812 1 T/C 3.86E-05 Zm00001d028010 Conserved oligomeric Golgi complex subunit 8
HnDTA qHnDTA1-1 chr1.S_12443338 1 A/C 4.38E-05 Zm00001d027752 SH2 domain protein B
HnDTA qHnDTA1-1 chr1.S_12443395 1 C/T 5.17E-05 Zm00001d027752 SH2 domain protein B
HnDTA qHnLB1-1 chr1.S_29513840 1 T/G 8.75E-05 Zm00001d028303 Branched-chain-amino-acid aminotransferase
HnDTA qHnLB1-1 chr1.S_29517378 1 G/T 3.58E-05 Zm00001d028303 Branched-chain-amino-acid aminotransferase
HnDTA qHnLB1-1 chr1.S_35770394 1 G/C 1.07E-05 Zm00001d028469 PGG domain-containing protein
HnDTA qHnDTA1-2 chr1.S_283970301 1 C/T 3.92E-05 Zm00001d034317 Methyltransferase
HnDTA qHnDTA1-2/qHnDTH1-1 chr1.S_286863933 1 G/A 2.39E-05 Zm00001d034406 25.3 kDa vesicle transport protein
HnDTA qHnDTA1-2/qHnDTH1-1 chr1.S_286980178 1 T/C 1.07E-05 Zm00001d034409 Hydroxyproline-rich glycoprotein family protein
HnDTA qHnDTA1-2/qHnDTH1-1 chr1.S_290115635 1 G/A 5.62E-05 Zm00001d034519 Putative acyl-activating enzyme 18 peroxisomal
HnDTH qHnDTA1-2 chr1.S_283970301 1 C/T 3.15E-05 Zm00001d034317 Methyltransferase
HnDTH qHnDTA1-2/qHnDTH1-1 chr1.S_286863933 1 G/A 1.29E-05 Zm00001d034406 25.3 kDa vesicle transport protein
HnDTH qHnDTA1-2/qHnDTH1-1 chr1.S_286980295 1 G/A 6.52E-05 Zm00001d034409 Hydroxyproline-rich glycoprotein family protein
HnLA qHnDTA1-2 chr1.S_283229666 1 A/G 1.37E-05 Zm00001d034276 Uncharacterized protein
HfDTH qHnLA2-1 chr2.S_42789389 2 C/T 6.62E-05 Zm00001d003446 Gamma-glutamyltranspeptidase 1
HnDTA qHnTLN2-1 chr2.S_1084283 2 A/G 8.87E-05 Zm00001d001798 Minichromosome instability12b
HnDTA qHnTLN2-1 chr2.S_1084664 2 T/C 3.25E-06 Zm00001d001798 Minichromosome instability12b
HnLA qHnLA2-1 chr2.S_44261048 2 G/A 8.97E-05 Zm00001d003499 E3 ubiquitin-protein ligase ATL6
HnDTA qHfDTH4-2/qHnDTS4-2 chr4.S_224038847 4 T/G 1.07E-05 Zm00001d053376 AAA-type ATPase family protein / ankyrin repeat family protein
HnDTA qHfDTH4-2/qHnDTS4-2 chr4.S_224038876 4 G/A 1.07E-05 Zm00001d053376 AAA-type ATPase family protein / ankyrin repeat family protein
HfDTA qHfDTH5-1 chr5.S_18632762 5 C/G 3.53E-05 Zm00001d013745 Uncharacterized protein
HnLB qHfDTH5-1 chr5.S_17862164 5 T/A 9.68E-05 Zm00001d000202 Uncharacterized protein
HnLB qHnDTS6-1 chr6.S_163425227 6 G/C 2.65E-05 Zm00001d038954 2-oxoglutarate and Fe (II)-dependent oxygenase superfamily protein
HfDTA qHnDTS9-1 chr9.S_48271409 9 A/G 2.47E-05 Zm00001d045962 Uncharacterized protein
HnDTA qHnDTS9-1 chr9.S_48271409 9 A/G 2.31E-05 Zm00001d045962 Uncharacterized protein
HnDTH qHnDTS9-1 chr9.S_48271409 9 A/G 3.36E-05 Zm00001d045962 Uncharacterized protein