Table 1 Basic characteristics of Citrus sinensis TCP genes
From: Genome-wide analysis of citrus TCP transcription factors and their responses to abiotic stresses
Gene name | Gene ID | Chromosome location | Strand | Length of CDS (bp) | Number of amino acids | Molecular weight (Da) | Theoretical pI | Signal peptide length (aa) | Predicted subcellular localization |
|---|---|---|---|---|---|---|---|---|---|
CsTCP1 | Cs2g08080.1 | chr2: 4848829..4853255 | – | 1515 | 504 | 55,291.28 | 7.16 | – | Nuclear |
CsTCP2 | Cs2g15820.1 | chr2: 12548474..12550882 | + | 1005 | 334 | 36,343.85 | 6.53 | – | Nuclear |
CsTCP3 | Cs2g25640.1 | chr2: 24866364..24868750 | + | 954 | 317 | 33,912.73 | 9.01 | – | Nuclear |
CsTCP4 | Cs3g22260.1 | chr3: 24926039..24927594 | – | 963 | 320 | 33,181.31 | 7.79 | – | Nuclear |
CsTCP5 | Cs5g03980.1 | chr5: 2195508..2197485 | + | 1281 | 426 | 46,428.83 | 7.10 | – | Nuclear |
CsTCP6 | Cs5g10130.1 | chr5: 6994168..6996231 | – | 1107 | 368 | 39,316.14 | 6.72 | – | Nuclear |
CsTCP7 | Cs5g12070.1 | chr5: 9052963..9054997 | + | 1098 | 365 | 40,856.09 | 6.74 | – | Nuclear |
CsTCP8 | Cs6g18940.1 | chr6: 18950739..18952107 | + | 897 | 298 | 34,061.36 | 9.38 | – | Nuclear |
CsTCP9 | Cs6g22270.1 | chr6: 21078708..21080763 | + | 1203 | 400 | 43,616.64 | 8.88 | – | Nuclear |
CsTCP10 | Cs7g03980.1 | chr7: 1887520..1889541 | + | 1185 | 394 | 42,105.60 | 7.78 | – | Nuclear |
CsTCP11 | Cs7g11120.1 | chr7: 7320850..7323133 | + | 825 | 274 | 29,286.77 | 9.44 | – | Nuclear |
CsTCP12 | Cs7g12770.1 | chr7: 8725990..8727399 | – | 1410 | 469 | 52,553.18 | 6.62 | – | Nuclear |
CsTCP13 | Cs7g25460.1 | chr7: 25950030..25952883 | + | 1281 | 426 | 46,861.16 | 6.78 | – | Nuclear |
CsTCP14 | Cs7g26250.1 | chr7: 26808458..26809706 | – | 1095 | 364 | 41,735.96 | 6.29 | – | Nuclear |
CsTCP15 | Cs8g16060.1 | chr8: 19154530..19155054 | + | 525 | 174 | 19,507.20 | 9.03 | – | Nuclear |
CsTCP16 | Cs8g16080.1 | chr8: 19169920..19171017 | + | 675 | 224 | 24,176.45 | 4.44 | – | Nuclear |
CsTCP17 | Cs9g12640.1 | chr9: 11059738..11061409 | + | 957 | 318 | 36,575.30 | 9.47 | – | Nuclear |
CsTCP18 | Cs9g16600.1 | chr9: 16080000..16081746 | – | 1017 | 338 | 35,966.34 | 8.84 | – | Nuclear |
CsTCP19 | orange1.1 t02428.1 | chrUn: 36970387..36971007 | + | 621 | 206 | 21,666.35 | 7.00 | – | Nuclear |
CsTCP20 | orange1.1 t03896.1 | chrUn: 59999964..60002615 | + | 1734 | 577 | 61,307.81 | 6.70 | – | Nuclear |