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Table 1 Detailed information of RNA-seq data

From: Overexpression VaPYL9 improves cold tolerance in tomato by regulating key genes in hormone signaling and antioxidant enzyme

Index Samples WT1 WT2 WT3 OE1 OE2 OE3
Sequencing data statistics Clean reads 20,112,132 27,809,393 25,022,722 25,669,474 25,182,500 23,361,247
Clean bases 6,011,496,948 8,314,175,984 7,490,345,612 7,672,294,656 7,525,008,224 6,982,459,062
GC Content 42.66% 42.07% 42.46% 41.79% 41.77% 41.75%
% ≥ Q30 94.52% 94.46% 94.43% 94.94% 95.01% 94.92%
Based on selected reference genome, statististic of sequence alignment results between sample sequencing data Total Reads 40,224,264 55,618,786 50,045,444 51,338,948 50,365,000 46,722,494
Mapped Reads 38,466,134(95.63%) 53,225,213(95.70%) 48,026,349(95.97%) 48,812,363(95.8%) 47,848,224(95.00%) 44,748,280(95.77%)
Uniq Mapped Reads 35,062,965(87.17%) 50,662,268(91.09%) 46,241,168(92.40%) 47,515,584(92.55%) 46,601,110(92.53%) 43,612,976(93.34%)
Multiple Map Reads 3,403,169(8.46%) 2,562,945(4.61%) 1,785,181(3.57%) 1,296,779(2.53%) 1,247,114(2.48%) 1,135,304(2.43%)
Reads Map to ‘ + ’ 18,558,770(46.14%) 26,181,517(47.07%) 23,744,948(47.45%) 24,259,222(47.25%) 23,771,258(47.20%) 22,257,873(47.64%)
ReadsMap to ‘-’ 19,022,283(47.29%) 26,451,663(47.56%) 23,917,058(47.79%) 24,327,689(47.39%) 23,850,045(47.35%) 22,312,867(47.76%)