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Table 1 Quality of the transcriptome of tea plant cuttings

From: Integrated transcriptome and hormonal analysis of naphthalene acetic acid-induced adventitious root formation of tea cuttings (Camellia sinensis)

Sample

Sample codes

Total raw reads

Total clean reads

Q30 percentage

GC percentage

Mapped reads

R-CK-1d

A1

55,748,520

54,902,578

90.89%

44.68%

48,461,126 (88.27%)

A2

45,180,146

44,519,734

90.79%

44.67%

39,218,588 (88.09%)

A3

56,566,114

55,926,244

91.78%

44.68%

49,444,924 (88.41%)

G-CK-1d

B1

44,381,646

43,750,294

92.05%

44.45%

39,676,319 (90.69%)

B2

52,844,132

52,205,426

91.42%

44.45%

47,188,315 (90.39%)

B3

52,031,904

51,009,182

91.94%

44.42%

46,167,529 (90.51%)

R-NAA-1d

C1

57,542,312

56,686,212

91.89%

44.59%

51,029,371 (90.02%)

C2

55,347,558

54,541,818

91.59%

44.45%

48,816,430 (89.5%)

C3

51,652,776

51,038,136

91.47%

44.55%

45,737,006 (89.61%)

G-NAA-1d

D1

52,700,594

52,057,588

90.97%

44.23%

46,509,280 (89.34%)

D2

55,390,048

54,436,326

90.91%

44.31%

48,726,670 (89.51%)

D3

56,837,616

55,965,548

91.10%

44.25%

50,099,962 (89.52%)

R-CK-8d

E1

46,872,348

46,240,196

92.72%

44.68%

41,131,620 (88.95%)

E2

49,103,480

48,415,422

91.14%

44.67%

42,851,995 (88.51%)

E3

50,104,932

49,475,110

91.93%

44.70%

44,022,857 (88.98%)

G-CK-8d

F1

63,410,740

62,124,940

90.87%

44.42%

55,965,379 (90.09%)

F2

50,629,854

49,770,586

90.94%

44.59%

45,090,269 (90.6%)

F3

54,849,538

53,952,010

91.47%

44.34%

48,785,963 (90.42%)

R-NAA-8d

G1

67,137,970

66,312,940

90.96%

44.62%

59,403,835 (89.58%)

G2

53,263,604

52,548,220

89.24%

44.64%

46,583,734 (88.65%)

G3

63,705,624

62,386,776

91.73%

44.61%

55,864,525 (89.55%)

G-NAA-8d

H1

55,555,552

54,971,598

91.33%

44.68%

49,699,991 (90.41%)

H2

40,449,238

39,861,204

86.19%

44.33%

34,024,657 (85.36%)

H3

48,181,458

47,547,582

88.58%

44.38%

41,066,507 (86.37%)

R-CK-15d

I1

47,395,304

46,844,706

90.23%

44.46%

41,872,539 (89.39%)

I2

54,717,128

54,094,692

90.30%

44.48%

48,221,365 (89.14%)

I3

60,353,348

59,666,972

89.08%

44.48%

52,824,484 (88.53%)

G-CK-15d

J1

41,621,104

41,221,466

91.20%

44.49%

37,187,978 (90.22%)

J2

54,133,590

53,526,422

91.27%

44.73%

48,540,696 (90.69%)

J3

60,629,848

59,836,052

90.28%

44.42%

53,573,924 (89.53%)

R-NAA-15d

K1

46,668,718

45,880,264

92.31%

44.63%

41,307,179 (90.03%)

K2

68,372,780

66,772,728

92.20%

44.56%

60,021,696 (89.89%)

K3

55,461,778

54,518,126

92.59%

44.67%

49,094,849 (90.05%)

G-NAA-15d

L1

47,265,242

46,458,626

92.44%

44.69%

41,911,565 (90.21%)

L2

48,935,976

48,099,790

91.55%

44.62%

43,335,448 (90.09%)

L3

48,331,024

47,521,016

92.14%

44.73%

43,008,727 (90.5%)

  1. Samples A, E, I represent red-stem cuttings (1, 8 and 15 days) under control. Samples B, F, J represent green-stem cuttings (1, 8 and 15 days) under control. Samples C, R, K represent red-stem cuttings (1, 8 and 15 days) under NAA treatment. Samples D, H, L represent green-stem cuttings (1, 8 and 15 days) under NAA treatment