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Fig. 4 | BMC Plant Biology

Fig. 4

From: Combining QTL mapping and gene co-expression network analysis for prediction of candidate genes and molecular network related to yield in wheat

Fig. 4

Candidate gene function classification and network prediction. A The functional classification of candidate genes was based on sequence BLAST with the Non-Redundant Protein Sequence Database (Nr), KEGG orthology (KO) and the Gene ontology (GO) database. Abbreviations for functional classes are as follows: Cyt, cell cytokinesis and cytoskeleton; Chr, chromatin binding; RNA, RNA binding; Tf, transcription factor; Sig, signaling; Def, defense or response to stresses; Cw, cell wall; Sto, storage proteins; Met, metabolism (enzymes); Nse, nuclease-like; Tra, membrane protein or transport, including protein, RNA or other material transport; Un, hypotheticals/unknowns/unknown function; Pro, protease or ubiquitin proteasome; Prk, Protein kinase-like; Sta, starch synthesis. B Predict the internal network of candidate genes for six different phenotypic traits. Darker green of node showed higher degree of network. Darker black of edge showed higher weight. (I) candidate genes for SL; (II) candidate genes for KL; (III) candidate genes for KW; (IV) candidate genes for TKW; (V) candidate genes for Seed dormancy; (VI) candidate genes for seed vigor

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BMC Plant Biology

ISSN: 1471-2229

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