Skip to main content

Table 4 List of genes top-10 genes that were up/downregulated in diseased N. indicum stem as compared to healthy stem

From: Combined transcriptome and metabolome analysis of Nerium indicum L. elaborates the key pathways that are activated in response to witches’ broom disease

Gene ID FPKM values Log2 foldchange Annotation
NOHS NOWS NOHS/NOWS
Cluster-13228.98726 0.00 4.43 12.38 lysine-specific histone demethylase 1A
Cluster-13228.61840 0.00 55.64 12.24 Not-annotated in any database
Cluster-13228.83721 0.00 37.82 11.92 Not-annotated in any database
Cluster-13228.81744 0.00 4.97 11.79 mitogen-activated protein kinase kinase kinase 13
Cluster-13228.71255 0.00 4.06 11.68 fructose-bisphosphate aldolase
Cluster-13228.55109 0.00 9.09 11.38 GDPmannose 4,6-dehydratase
Cluster-13228.81725 0.00 21.30 11.20 KDEL-tailed cysteine endopeptidase
Cluster-13228.107437 0.00 10.22 11.05 tyrosine aminotransferase
Cluster-13228.71611 0.00 7.23 10.86 WRKY transcription factor 19
Cluster-13228.48102 0.00 2.87 10.77 Pancreatic ribonuclease
Cluster-13228.155066 1.03 0.00 -7.83 tryptophan synthase beta chain
Cluster-13228.107425 0.79 0.00 -7.87 trichothecene 3-O-acetyltransferase
Cluster-13228.63605 1.30 0.01 -8.02 cyclin-dependent kinase 12/13
Cluster-13228.59030 8.04 0.03 -8.03 tetraspanin-4
Cluster-13228.133143 1.51 0.00 -8.43 reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
Cluster-13228.101103 5.01 0.01 -8.70 ribulose-phosphate 3-epimerase
Cluster-13228.76336 1.81 0.00 -8.95 peroxin-5
Cluster-13228.71456 13.23 0.02 -9.18 LIFEGUARD 4
Cluster-13228.97191 2.17 0.00 -9.23 peroxin-5
Cluster-13228.76679 2.65 0.00 -9.31 DnaJ homolog subfamily B member 5
  1. NOWS, NOHS, NOWP, and NOHP represent diseased stem tip, healthy stem tip, diseased phloem, and healthy phloem of N. indicum