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Table 3 List of top-10 genes that were up/downregulated in diseased N. indicum phloem as compared to healthy phloem

From: Combined transcriptome and metabolome analysis of Nerium indicum L. elaborates the key pathways that are activated in response to witches’ broom disease

Gene ID FPKM Values Log2 foldchange Annotation
NOHP NOWP NOHP/NOWP
Cluster-13228.51868 0.00 47.41 13.97 transcriptional activator of proteases prtt
Cluster-13228.57048 0.00 32.70 13.66 transcriptional regulator rpn4
Cluster-13228.83464 0.00 17.89 13.62 ubiquitin carboxyl-terminal hydrolase 36/42
Cluster-13228.51250 0.00 80.97 13.46 beta-amyrin 28-monooxygenase
Cluster-13228.74406 0.00 19.59 13.31 abscisic-aldehyde oxidase
Cluster-13228.41301 0.00 51.54 13.27 viridiflorene synthase
Cluster-13228.56658 0.00 40.72 13.26 cytokinin dehydrogenase
Cluster-13228.110860 0.00 18.56 13.07 cathepsin A (carboxypeptidase C)
Cluster-13228.119834 0.00 29.84 13.02 arrestin-related trafficking adapter 4/5/7
Cluster-13228.65339 0 594.00 12.91 expansin
Cluster-13228.124673 2.37 0.00 -8.16 arginase
Cluster-13228.124659 64.11 0.19 -8.35 AtLAZY1
Cluster-13228.58619 361.92 0.97 -8.46 thiamine thiazole synthase
Cluster-13239.0 4.87 0.01 -8.49 4-hydroxyphenylpyruvate dioxygenase
Cluster-13228.12868 74.88 0.19 -8.52 steroid 17alpha-monooxygenase / 17alpha-hydroxyprogesterone deacetylase
Cluster-13228.104385 1.09 0.00 -8.57 E3 ubiquitin-protein ligase MGRN1
Cluster-13228.90657 1.50 0.00 -8.66 protein downstream neighbor of Son
Cluster-13228.107206 39.72 0.11 -8.68 PROTON GRADIENT REGULATION 5
Cluster-13228.125163 33.23 0.07 -8.72 charged multivesicular body protein 5
Cluster-13228.67277 3.62 0.00 -9.61 ATP-dependent RNA/DNA helicase IGHMBP2
  1. NOWS, NOHS, NOWP, and NOHP represent diseased stem tip, healthy stem tip, diseased phloem, and healthy phloem of N. indicum