Transcriptome analysis of the winter wheat Dn1 in response to cold stress

Tian, Yu; Peng, Kankan; Lou, Guicheng; Ren, Zhipeng; Sun, Xianze; Wang, Zhengwei; Xing, Jinpu; Song, Chunhua; Cang, Jing

doi:10.1186/s12870-022-03654-1

BMC Plant Biology

Table 1 Summary of Dn1 RNA-seq data

From: Transcriptome analysis of the winter wheat Dn1 in response to cold stress

Sample	Raw Data	Valid Data	Valid Ratio	Q30%	GC content%	Mapped reads	Unique Mapped reads	Multi Mapped reads
Tn_5_1	47,236,140	43,092,004	91.23	98.62	50	41,054,960	30,160,876	10,894,084
Tn_5_2	40,096,482	31,285,112	78.02	98.58	50	29,635,962	22,139,512	7,496,450
Tn_5_3	44,923,136	37,885,726	84.33	98.55	50	35,992,455	26,603,295	9,389,160
Tn_0_1	47,686,166	45,009,446	94.39	98.62	50	42,851,440	31,751,724	11,099,716
Tn_0_2	49,153,908	45,206,694	91.97	98.49	49	42,977,551	315,54,028	11,423,523
Tn_0_3	54,010,602	47,469,770	87.89	98.46	50	45,037,829	33,019,695	12,018,134
Tn_M5_1	55,596,548	51,055,942	91.83	98.58	49	48,440,883	35,325,780	13,115,103
Tn_M5_2	51,441,478	49,053,588	95.36	98.78	49	46,877,584	35,058,768	11,818,816
Tn_M5_3	53,207,626	50,270,280	94.48	98.69	49	48,078,745	35,549,614	12,529,131
Tn_M10_1	51,597,508	48,435,476	93.87	98.65	49	46,185,883	34,049,453	12,136,430
Tn_M10_2	46,148,008	38,698,282	83.86	98.68	49	36,768,620	26,970,121	9,798,499
Tn_M10_3	53,072,922	48,755,468	91.87	98.68	50	46,503,161	34,318,561	12,184,600
Tn_M15_1	55,028,300	50,565,852	91.89	98.66	50	47,925,257	35,642,800	12,282,457
Tn_M15_2	53,716,922	50,735,452	94.45	98.62	49	48,221,268	35,614,791	12,606,477
Tn_M15_3	51,681,194	49,056,980	94.92	98.60	49	46,747,927	35,046,514	11,701,413
Tn_M20_1	43,593,546	39,654,096	90.96	98.71	50	36,404,643	27,467,531	8,937,112
Tn_M20_2	52,063,714	47,143,198	90.55	98.69	50	44,501,336	33,059,695	11,441,641
Tn_M20_3	46,321,730	43,761,072	94.47	98.72	50	39,311,722	29,038,917	10,272,805
Tn_M25_1	38,960,298	35,049,058	89.96	98.61	50	33,049,482	24,797,916	8,251,566
Tn_M25_2	50,889,970	48,362,586	95.03	98.77	49	46,018,962	34,380,829	11,638,133
Tn_M25_3	51,634,566	48,881,308	94.67	98.72	49	45,731,102	33,556,695	12,174,407

Tn_5 tillering node samples at 5 °C, Tn_0 tillering node samples at 0 °C, Tn_M5 tillering node samples at -5 °C, Tn_M10 tillering node samples at -10 °C, Tn_M15 tillering node samples at -15 °C, Tn_M20 tillering node samples at -20 °C, Tn_M25 tillering node samples at -25 °C

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ISSN: 1471-2229

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