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Table 1 Summary of the lllumina degradome sequencing data of unaged and artificially aged WT, MIM164c, and OE164c seeds

From: Degradome sequencing reveals an integrative miRNA-mediated gene interaction network regulating rice seed vigor

Variable

Aa-WT

A-MIM164c

A-OE164c

Bb-WT

B-MIM164c

B-OE164c

Total

Number

%

Number

%

Number

%

Number

%

Number

%

Number

%

Number

%

Raw reads

23,290,765

n.a.c

39,475,861

n.a.

105,051,201

n.a.

11,574,728

n.a.

23,358,523

n.a.

75,229,379

n.a.

277,980,457

n.a.

Reads< 15 nt in length after removing the 3′-adaptor sequences

115,963

0.5

150,392

0.38

438,675

0.42

52,118

0.45

114,625

0.49

291,424

0.39

1,163,197

0.42

Mappable reads

23,174,802

99.5

39,325,469

99.62

104,612,526

99.58

11,522,610

99.55

23,243,898

99.51

74,937,955

99.61

276,817,260

99.58

Transcript mapped reads

13,086,100

56.19

19,232,591

48.72

49,082,507

46.72

6,072,389

52.46

12,433,643

53.23

35,928,730

47.76

135,835,960

48.8

Unique raw reads

5,910,027

n.a.

7,499,373

n.a.

14,920,325

n.a.

4,409,611

n.a.

6,992,505

n.a.

14,893,430

n.a.

35,326,716

n.a.

Unique reads < 15 nt in length after removing three adaptor sequences

31,617

0.53

41,124

0.55

77,208

0.52

24,911

0.56

37,938

0.54

80,857

0.54

181,550

0.51

Unique mappable reads

5,878,410

99.47

7,458,249

99.45

14,843,117

99.48

4,384,700

99.44

69,54,567

99.46

14,812,573

99.46

35,145,166

99.49

Unique transcript mapped reads

3,675,827

62.2

4,501,572

60.03

7,887,621

52.86

2,797,531

63.44

3,961,237

56.65

8,498,489

57.06

17,031,820

48.21

No. of input transcripts

42,387

n.a.

42,387

n.a.

42,387

n.a.

42,387

n.a.

42,387

n.a.

42,387

n.a.

42,387

n.a.

No. of covered transcripts

33,806

79.76

33,227

78.39

36,332

85.71

34,687

81.83

35,095

82.8

38,044

89.75

39,538

93.28

  1. aA indicates unaged seeds
  2. bB indicates artificially aged seeds
  3. cn.a. indicates not applicable