Fig. 3
Networks showing the interaction between differentially expressed miRNAs and their corresponding predicted target genes. A The common differentially expressed miRNAs in both ROC22 and FN39. B The specific differentially expressed miRNAs in ROC22. C The specific differentially expressed miRNAs in FN39. ROC22 and FN39 respectively represent sugarcane mosaic disease-susceptible and -resistant varieties. Red triangles represent differentially expressed miRNAs, and green circles represent target genes. UN means a hypothetical protein with unknown function. The description of the annotated target gene follows its gene ID with a red font. PP2Ac, phosphatase 2A-3 catalytic subunit-like; TOM40, translocase of the outer mitochondrial membrane 40; PRR73, pseudo-response regulator 73; CML32, calcium-binding protein 32; ATPs-3, ATP-sulfurylase 3; SULTR2;1, sulfate transporter 2;1; SULTR2;2, sulfate transporter 2;2; LAST-3, low affinity sulfate transporter 3-like; osca1, reduced hyperosmolality-induced Ca2+ increase 1; GlcAT14B, beta-glucuronosyltransferase 14B; PRPL2, 50S chloroplastic ribosomal protein L2; CLAP, clathrin assembly protein; SCL, scarecrow-like protein; CML10, calmodulin-like protein 10; VDAC2, voltage-dependent anion channel 2; NPF5.10, protein NRT1/PTR family 5.10; GRF2, growth-regulating factor 2; UCH, ubiquitin carboxyl-terminal hydrolase; RDDP, RNA dependent DNA polymerase; RPB1, DNA-directed RNA polymerase V subunit 1; ARF6, auxin response factor 6; BCDH BETA1, branched-chain alpha-keto acid decarboxylase E1 beta subunit; MSRA2-1, peptide methionine sulfoxide reductase A2-1; STR7, rhodanese-like domain-containing protein 7; PILS1, pin-likes 1; TBL31, protein trichome birefringence-like 31; CYP20-3, peptidyl-prolyl cis–trans isomerase CYP20-3; Ala, alanine–tRNA ligase, chloroplastic; ELP6, elongator complex protein 6; NAC078, NAC domain-containing protein 78; rbcLBP, Rubisco large subunit-binding protein; HOX32, homeobox-leucine zipper protein; NFYC-1, nuclear transcription factor Y subunit C-1; LCAT, lecithin-cholesterol acyltransferase-like 1; ATG8c, autophagy-related protein 8C-like; ATAD3A, ATPase family AAA domain-containing protein 3-A; PPR, pentatricopeptide repeat-containing protein; RING/FYVE/PHD-type, RING/FYVE/PHD zinc finger superfamily protein; PRPS6, 30S chloroplastic ribosomal protein S6; and Luc7l, putative RNA-binding protein Luc7-like 1