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Table 5 DEGs between the two Lepidium species annotated as “DNA-binding transcription factor activity”. (GO:0003700). Reg., regulation

From: Comparative transcriptomics identifies candidate genes involved in the evolutionary transition from dehiscent to indehiscent fruits in Lepidium (Brassicaceae)

Ortholog ID Ortholog name Ortholog description (based on TAIR) Reg. bud Reg. flower Reg. fruit
AT1G01060.1 LHY Involved in circadian rhythm 2.5 2.4 2.8
AT1G14687.1 HB32, ZHD14 n.a -4.0 -3.1 -2.2
AT1G27370.1 SPL10 Development of lateral organs, lamina shape, lateral root growth -3.9 -3.8 -4.6
AT1G46264.1 HSFB4, SCZ Asymmetry of stem cell devisions -5.3 -4.4 -4.1
AT1G53160.2 FTM6, SPL4 Regulation of flowering and vegetative phase change -5.2 -5.3 -4.5
AT1G79840.2 GL2 Regulation of epidermal cell identity, regulation of seed oil content 3.5 3.6 2.7
AT3G09370.2 MYB3R-3 DNA damage response -2.4 -2.2 -2.6
AT3G11280.1 n.a n.a -2.6 -2.9 -2.9
AT3G14020.1 NF-YA6 Involved in male gametogenesis, embryogenesis, and seed development -2.6 -2.2 -2.4
AT3G53340.1 NF-YB10 Flowering time determination 3.3 3.4 4.9
AT4G00180.1 YAB3 Specification of abaxial cell fate, involved in fruit patterning along with FIL -2.6 -2.5 -2.5
AT4G01280.2 RVE5 Clock regulation, growth regulation 2.6 2.2 2.2
AT4G31060.1 n.a n.a -2.9 -3.5 -3.4
AT5G04340.1 C2H2, CZF2, ZAT6 Phosphate homeostasis, Cd accumulation and tolerance 4.0 4.6 3.4
AT5G10140.1 AGL25, FLC, FLF, RSB6 Flowering time determination 3.7 4.1 5.6
AT5G39760.1 HB23, ZHD10 Light-induced development 7.2 6.3 4.9
AT5G41920.1 SCL23 Endodermis development -5.0 -5.3 -3.9
AT5G47640.1 NF-YB2 Flowering time determination 2.2 2.6 2.4
AT5G60910.1 AGL8, FUL Fruit development, apical hook development -2.9 -2.4 -2.7