Table 2 miRNAs identified in short read data of L. campestre and L. appelianum  by mapping to A. thaliana mature miRNAs or using ShortStack with transcriptome or genome data as reference. Highlighted in bold are conserved miRNAs according to Chavez-Montez et al., 2014 [37], bold and italic indicate moderately conserved miRNAs according to Chavez-Montez et al., 2014 [37]

miR156a-3p/miR156c-3p

x

miR156c

x

miR156a

miR156a-5p/miR156b-5p/

miR156c-5p/miR156d-5p/

miR156e/miR156f-5p/

miR156g/miR156h/

miR156i/miR156j

x

miR156e,

miR156b,

miR156c

x

miR156a, miR156j

miR156b-3p

x

miR156b

x

miR156d-3p

x

miR157a-3p/miR157b-3p

x

x

miR157a-5p/miR157b-5p/

miR157c-5p/miR157d

x

miR157c

x

miR157c-3p

x

miR157c

x

miR158a-3p/miR158b

x

x

miR158a

miR159a/miR159b-3p

x

x

miR159c

x

x

miR160a-3p

x

miR160a

x

miR160a-5p/miR160b/

miR160c-5p

x

miR160a, miR160c

miR160b

x

miR160c-3p

x

miR160c

miR161.1

x

miR161.2

x

miR162a-3p/miR162b-3p

x

miR162b

x

miR162b

miR162a-5p/miR162b-5p

x

miR162b

x

miR162b

miR164a/miR164b-5p/

miR164c-5p

x

miR164a

x

miR164b-3p

x

x

miR164c-3p

x

x

miR165a-3p/miR165b/

miR166a-3p/miR166b-3p/

miR166c/miR166d/

miR166e-3p/miR166f/miR166g

x

miR165b,

miR166d, miR166g

x

miR166a, miR166b, miR166e, miR166f

miR165a-5p

x

x

miR166a-5p/miR166b-5p

x

x

miR166a, miR166b

miR166e-5p

x

x

miR166e

miR167a-3p

x

x

miR167a-5p/miR167b/miR167d

x

miR167b

x

miR167c-5p

x

miR167c

x

miR168a-3p

x

miR168a

x

miR168a

miR168a-5p/miR168b-5p

x

miR168a

x

miR168a

miR169a-5p/miR169b-5p/

miR169c

x

x

miR169d/miR169e/

miR169f-5p/miR169g-5p

x

x

miR169f-3p

x

x

miR170-5p/miR171a-5p

x

miR171a

x

miR170, miR171a

miR171a-3p

x

miR171a

x

miR171b-5p/miR171c-5p

x

miR171b

x

miR171b, miR171c

miR171b-3p/miR171c-3p

x

miR171b

x

miR171b, miR171c

miR172a/miR172b-3p/

miR172c/miR172d-3p/

miR172e-3p

x

miR172b (partial)

miR172e

x

miR172b (partial)

miR172b-5p/miR172e-5p

x

miR172b (partial)

miR172e

x

miR172b (partial)

miR172d-5p

x

x

miR2111b-3p

x

miR319a/miR319b

x

x

miR319c

x

x

miR390a-3p

x

x

miR390a-5p/miR390b-5p

x

x

miR390b-3p

x

x

miR393a-3p/miR393b-3p

x

miR393b

x

miR393b

miR393a-5p/miR393b-5p

x

miR393b

x

miR393b

miR394a/miR394b-5p

x

x

miR394b

miR395a/miR395b/miR395c/

miR395d/miR395e/miR395f

x

x

miR395d, miR395f

miR396a-3p

x

miR396a

x

miR396a-5p/miR396b-5p

x

miR396a

x

miR396b-3p

x

x

miR398a-3p/miR398b-3p/

miR398c-3p

x

miR398b

miR399a/miR399b/miR399c-3p

x

miR399a

x

miR399f

x

miR403-3p

x

x

miR403-5p

x

miR408-3p

x

x

miR408-5p

x

x

miR472

miR472

miR8174

x

miR8175

x

x

miR824-3p

x

x

miR824-5p

x

x

miR827

x

miR827

x

miR845a

x

miR845b

x

miR858a/miR858b

x

x

miR863-5p

x