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Table 2 miRNAs identified in short read data of L. campestre and L. appelianum  by mapping to A. thaliana mature miRNAs or using ShortStack with transcriptome or genome data as reference. Highlighted in bold are conserved miRNAs according to Chavez-Montez et al., 2014 [37], bold and italic indicate moderately conserved miRNAs according to Chavez-Montez et al., 2014 [37]

From: Comparative transcriptomics identifies candidate genes involved in the evolutionary transition from dehiscent to indehiscent fruits in Lepidium (Brassicaceae)

miRNA family L. campestre
mature miRNA
L. campestre ShortStack genome L. campestre ShortStack transcriptome L. appelianum
mature miRNA
L. appelianum ShortStack transcriptome
miR156a-3p/miR156c-3p x miR156c   x miR156a
miR156a-5p/miR156b-5p/
miR156c-5p/miR156d-5p/
miR156e/miR156f-5p/
miR156g/miR156h/
miR156i/miR156j
x miR156e,
miR156b,
miR156c
  x miR156a, miR156j
miR156b-3p x miR156b   x  
miR156d-3p     x  
miR157a-3p/miR157b-3p x    x  
miR157a-5p/miR157b-5p/
miR157c-5p/miR157d
x   miR157c x  
miR157c-3p x   miR157c x  
miR158a-3p/miR158b x    x miR158a
miR159a/miR159b-3p x    x  
miR159c x    x  
miR160a-3p x miR160a   x  
miR160a-5p/miR160b/
miR160c-5p
x miR160a, miR160c miR160b x  
miR160c-3p x miR160c    
miR161.1 x     
miR161.2 x     
miR162a-3p/miR162b-3p x miR162b   x miR162b
miR162a-5p/miR162b-5p x miR162b   x miR162b
miR164a/miR164b-5p/
miR164c-5p
x miR164a   x  
miR164b-3p x    x  
miR164c-3p x    x  
miR165a-3p/miR165b/
miR166a-3p/miR166b-3p/
miR166c/miR166d/
miR166e-3p/miR166f/miR166g
x miR165b,
miR166d, miR166g
  x miR166a, miR166b, miR166e, miR166f
miR165a-5p x    x  
miR166a-5p/miR166b-5p x    x miR166a, miR166b
miR166e-5p x    x miR166e
miR167a-3p x    x  
miR167a-5p/miR167b/miR167d x miR167b   x  
miR167c-5p x miR167c   x  
miR168a-3p x   miR168a x miR168a
miR168a-5p/miR168b-5p x   miR168a x miR168a
miR169a-5p/miR169b-5p/
miR169c
x    x  
miR169d/miR169e/
miR169f-5p/miR169g-5p
x    x  
miR169f-3p x    x  
miR170-5p/miR171a-5p x miR171a   x miR170, miR171a
miR171a-3p x miR171a   x  
miR171b-5p/miR171c-5p x   miR171b x miR171b, miR171c
miR171b-3p/miR171c-3p x   miR171b x miR171b, miR171c
miR172a/miR172b-3p/
miR172c/miR172d-3p/
miR172e-3p
x miR172b (partial) miR172e x miR172b (partial)
miR172b-5p/miR172e-5p x miR172b (partial) miR172e x miR172b (partial)
miR172d-5p x    x  
miR2111b-3p x     
miR319a/miR319b x    x  
miR319c x    x  
miR390a-3p x    x  
miR390a-5p/miR390b-5p x    x  
miR390b-3p x    x  
miR393a-3p/miR393b-3p x   miR393b x miR393b
miR393a-5p/miR393b-5p x   miR393b x miR393b
miR394a/miR394b-5p x    x miR394b
miR395a/miR395b/miR395c/
miR395d/miR395e/miR395f
x    x miR395d, miR395f
miR396a-3p x miR396a   x  
miR396a-5p/miR396b-5p x miR396a   x  
miR396b-3p x    x  
miR398a-3p/miR398b-3p/
miR398c-3p
    x miR398b
miR399a/miR399b/miR399c-3p x miR399a   x  
miR399f     x  
miR403-3p x    x  
miR403-5p x     
miR408-3p x    x  
miR408-5p x    x  
miR472    miR472   
miR8174     x  
miR8175 x    x  
miR824-3p x    x  
miR824-5p x    x  
miR827 x   miR827 x  
miR845a x     
miR845b x     
miR858a/miR858b x    x  
miR863-5p x