Comparative transcriptomics identifies candidate genes involved in the evolutionary transition from dehiscent to indehiscent fruits in Lepidium (Brassicaceae)

Table 1 Number of reads obtained after sequencing and after correction and pruning steps

Experiment	Species	Structure	Replicate	Raw reads	Uncorrectable, unpaired reads removed	Thrips and organelle sequences removed
mRNA	L. campestre	Bud	1	56,364,306	47,437,984	42,661,682
			2	52,626,578	44,103,956	42,345,608
			3	46,984,896	38,458,226	35,556,348
		Flower	1	53,973,840	45,071,412	42,388,254
			2	54,176,184	43,661,258	40,639,670
			3	47,473,062	37,866,352	33,766,726
		Fruit	1	66,540,836	59,074,352	48,284,508
			2	67,087,830	57,231,738	45,811,592
			3	57,259,526	48,363,464	41,299,370
	L. appelianum	Bud	1	61,044,624	51,099,508	47,872,858
			2	57,117,360	45,964,748	41,954,354
			3	56,803,334	47,261,624	42,970,772
		Flower	1	54,109,008	45,806,166	41,765,762
			2	60,218,542	49,851,062	46,492,188
			3	59,056,126	49,511,932	46,039,554
		Fruit	1	51,115,752	42,013,148	38,781,852
			2	53,010,164	42,607,090	40,845,816
			3	58,202,346	48,358,214	43,294,808
smallRNA	L. campestre	Bud	1	12,317,448	11,640,550	1,065,134
			2	12,888,040	11,434,250	1,234,296
			3	13,084,802	18,556,186	4,545,624
		Flower	1	13,199,751	12,576,208	1,321,440
			2	14,250,796	21,800,894	4,334,830
			3	11,931,106	10,446,892	991,708
		Fruit	1	12,600,710	10,038,752	908,384
			2	12,171,462	10,194,186	430,032
			3	12,245,803	15,075,818	1,955,400
	L. appelianum	Bud	1	11,107,988	7,005,858	444,744
			2	12,258,200	7,404,808	1,044,044
			3	12,371,624	11,155,240	1,227,638
		Flower	1	11,665,136	7,039,858	359,098
			2	10,806,199	6,161,922	279,758
			3	10,702,759	5,090,392	250,238
		Fruit	1	11,180,533	10,409,022	1,667,408
			2	11,088,927	10,542,716	1,354,590
			3	12,727,467	16,904,122	3,445,396

ISSN: 1471-2229