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Table 1 Number of reads obtained after sequencing and after correction and pruning steps

From: Comparative transcriptomics identifies candidate genes involved in the evolutionary transition from dehiscent to indehiscent fruits in Lepidium (Brassicaceae)

Experiment Species Structure Replicate Raw reads Uncorrectable, unpaired reads removed Thrips and organelle sequences removed
mRNA L. campestre Bud 1 56,364,306 47,437,984 42,661,682
2 52,626,578 44,103,956 42,345,608
3 46,984,896 38,458,226 35,556,348
Flower 1 53,973,840 45,071,412 42,388,254
2 54,176,184 43,661,258 40,639,670
3 47,473,062 37,866,352 33,766,726
Fruit 1 66,540,836 59,074,352 48,284,508
2 67,087,830 57,231,738 45,811,592
3 57,259,526 48,363,464 41,299,370
L. appelianum Bud 1 61,044,624 51,099,508 47,872,858
2 57,117,360 45,964,748 41,954,354
3 56,803,334 47,261,624 42,970,772
Flower 1 54,109,008 45,806,166 41,765,762
2 60,218,542 49,851,062 46,492,188
3 59,056,126 49,511,932 46,039,554
Fruit 1 51,115,752 42,013,148 38,781,852
2 53,010,164 42,607,090 40,845,816
3 58,202,346 48,358,214 43,294,808
smallRNA L. campestre Bud 1 12,317,448 11,640,550 1,065,134
2 12,888,040 11,434,250 1,234,296
3 13,084,802 18,556,186 4,545,624
Flower 1 13,199,751 12,576,208 1,321,440
2 14,250,796 21,800,894 4,334,830
3 11,931,106 10,446,892 991,708
Fruit 1 12,600,710 10,038,752 908,384
2 12,171,462 10,194,186 430,032
3 12,245,803 15,075,818 1,955,400
L. appelianum Bud 1 11,107,988 7,005,858 444,744
2 12,258,200 7,404,808 1,044,044
3 12,371,624 11,155,240 1,227,638
Flower 1 11,665,136 7,039,858 359,098
2 10,806,199 6,161,922 279,758
3 10,702,759 5,090,392 250,238
Fruit 1 11,180,533 10,409,022 1,667,408
2 11,088,927 10,542,716 1,354,590
3 12,727,467 16,904,122 3,445,396