Table 3 Description of expected MTAs using imputed SNPs for seed traits of Iranian wheat accessions in well-watered environment
No | SNP | Sequence | Trait- Index | Chromosome | Position (bp) | Cellular component | Molecular process | Biological process |
|---|---|---|---|---|---|---|---|---|
1 | rs10741 | TGCAGCAAAAGTCTGAGTTCCTCCTCTCTGAGGTGGGGCTGGAACCAGCATACGTTGCTCATCG | GP, SS, SI, SSp and A.amy | 6B | 5683 | - | double-stranded DNA binding | regulation of transcription, DNA-templated |
2 | rs12754 | TGCAGCAAGTGGCGTATAGGGTTGGGTTTACCTGGTCAGAGTGAAGGTCTGACCGAAACTTTTT | GP, SS, SI and SSp | 6B | 58,062 | - | - | - |
3 | rs13478 | TGCAGCACACACCGTCGGCATGCTACACGTGTCTTCAAGATGAGGATAACCCCGATCACATTCT | b and Chroma | 3B | 76,224 | - | - | - |
4 | rs15410 | TGCAGCACTACCCCCACACCCAAAGCAACTCCGTACTAGCGATGTTGCTTCCCTTTCTCACTAA | GP, SS, SI and A.amy | 1A | 66,115 | - | - | - |
5 | rs19991 | TGCAGCATGGTGACCGCCGAGACCAGCATGGATTTCAGCCAGGAGCTGTTGTCCCTCTTCTTCG | GP, SS, SI and A.amy | 1B | 47,847 | - | - | - |
6 | rs19993 | TGCAGCATGGTGACCGCCGAGACCAGCATGGATTTCAGCCAGGAGCTGTTGTCCCTCTTCTTCG | GP, SS, SI and A.amy | 1B | 47,847 | - | - | - |
7 | rs22935 | TGCAGCCCACCAGGGAACCGTCATCGTCGCCCCGATCGCCACCGTCGCCCCCGAGCTCCACCGA | GP, SS, SI and A.amy | 1B | 47,847 | - | - | - |
8 | rs23642 | TGCAGCCCCGCAGAGGGCACGGAACGCGCGAGCGCGCGCGCACTTCAGCGCAGGCAAACATGGT | SSp, L and WI | 1A | 44,512 | - | - | - |
9 | rs27586 | TGCAGCCTTCCTACAAGGCATCCACGTACCGTCGGCTGTGTCTTCAACCTGACGATTAATGAGA | b, L and Chroma | 2D | 58,883 | - | - | - |
10 | rs27947 | TGCAGCGAAGCATCACAACACTGCAATGGAGCGTCGCCG | GP, SS, SI and A.amy | 6D | 119,937 | - | - | - |
11 | rs27948 | TGCAGCGAAGCATCACAACACTGCAATGGAGCGTCGCCG | GP, SS, SI and A.amy | 6D | 119,937 | - | - | - |
12 | rs27950 | TGCAGCGAAGCATCACGACACTGCAATGGAGCGTCGCCCG | GP, SS, SI and A.amy | 6D | 119,937 | - | - | - |
13 | rs27951 | TGCAGCGAAGCATCACGACACTGCAATGGAGCGTCGCCCG | GP, SS, SI and A.amy | 6D | 119,937 | - | protein binding | - |
14 | rs3368 | TGCAGACACTATGTTTGATTCGCCAGTGGATGCACAACGGACAGGCACCGAGATCGGAAGAGCG | b and Chroma | 3B | 77,361 | - | - | - |
15 | rs34002 | TGCAGCGTGTGGAGATCAAGCGAGAAGCACACCATATACGGCCTGGACACAGTGTACGAATCCC | GP, SS, SI and A.amy | 7B | 72,800 | - | - | - |
16 | rs35658 | TGCAGCTCAACCAAACACAGCCTAAAGCTCATTCTCGCCTAACTACGAGGACAAAATGTTGGCA | L and WI | 5B | 45,594 | - | - | - |
17 | rs36765 | TGCAGCTCCGCTTCGCTCCACCAGGTACGCCTCCCACCTCCACCACCCTCTGGTCGGGAAGTGG | GP, SS, SI and A.amy | 7B | 72,800 | - | - | - |
18 | rs40099 | TGCAGCTGGTTCACTGTAGACCTGCGACTCACGGCAGGAGAGGCGAATCCGAGATCGGAAGAGC | L and WI | 7B | 12,528 | - | - | - |
19 | rs42907 | TGCAGGAATCCCGCTTACTCCATGGATCTCTATTGATGGTGATCAACGGTTTGCTTGGCTGATG | b, L, WI and Chroma | 2A | 11,390 | - | - | - |
20 | rs43563 | TGCAGGACGAGATAAATCGAGTCACCGAAGGCAAACCGACCATCGAGGAAGACGACCTCAGCAG | a and Hue | 5B | 51,278 | - | monooxygenase activity; iron ion binding; oxidoreductase activity | oxidation–reduction process |
21 | rs44886 | TGCAGGAGGTGTGCGACAGCATAACACCGATGCCTAAAGGAAGGTTAAGGACGACCACAACCAC | GP, SS, SI and SSp | 5D | 7959 | - | - | - |
22 | rs45340 | TGCAGGATCTGTACAAGTGGGCTACTCGATGTAATTTTAGCCGAGATCGGAAGAGCGGGATCAC | GP, SS, SI and SSp | 3B | 113,948 | - | - | - |
23 | rs51766 | TGCAGGGTGAAATTAAAGCACTGCTAGCTGCTAGTACGAAACAAGATGCATGTTCAGCGTTAGT | GP, SS, SI, SSp and A.amy | 4B | 61,749 | - | - | - |
24 | rs53795 | TGCAGGTGATCGTGGAGGAGAGCAACACCAACTGCGCCTACTAACCCACCGACGAACCATTAGC | b, L and WI | 3B | 121,341 | - | - | - |
25 | rs54459 | TGCAGGTGGTCGAAGCAGCAGAAGCAGTAGGCGTCGTCGGTGGGGGCAGCAACAGCAGTAGGCG | GP, SS, SI, SSp, A.amy, L and WI | 1A | 44,512 | - | - | - |
26 | rs54460 | TGCAGGTGGTCGAAGCAGCAGAAGCAGTAGGCGTCGTCGGTGGGGGCAGCAACAGCAGTAGGCG | GP, SS, SI, SSp, A.amy, L and WI | 1A | 44,512 | - | - | - |
27 | rs54593 | TGCAGGTGTCGGCGCCCGATGTCATACCGAGGGTTCCTCAACCCTCGCCTGCTATGGAACATCA | GP, SS, SI and SSp | 3B | 113,379 | - | - | - |
28 | rs6018 | TGCAGAGCCGATCCTGCAAAACAAACCCAGCTCTAACACCCTGTGATTTCCCGAGATCGGAAGA | GP, SS, SI and SSp | 3B | 113,379 | - | - | - |
29 | rs62109 | TGCAGTGTCTCCACGCGACCCACCCCGATGCAGGCCGCGTGAAGGCCGCCGTACTGGGACGCCA | GP, SS, SI, SSp, A.amy, L and WI | 7B | 63,702 | - | Intracellular transport | |
30 | rs63948 | TGCAGTTGATGATAGCTAAACCCACGGAACCCTACGTGGATAACCAGCGGCCGCGCTGTACCTT | L, WI, Hue and Chroma | 6D | 119,937 | - | - | - |
31 | rs8926 | TGCAGATGAAACGCCTGCACATGTAACAAATAAACAGACTATTACATGCTCTATCTCTATACGC | GP, SS, SI, SSp, A.amy, L and WI | 4A | 44,512 | - | - | - |
32 | rs20094 | TGCAGCATGTGCCCCGCGGCACGAACAACGAAGCCGACGATATCGCCAAGAGGGTGTCCAGGCG | L and WI | 4D | 54,756 | - | - | - |
33 | rs21099 | TGCAGCCACATCTGCCATTCATTCCGTTCTTGGTGCTGCTTGGGCCATACCTGTTACTCCTTTC | GP, SS, SI and SSp | 7A | 59,400 | Integral component of membrane | - | - |
34 | rs33980 | TGCAGCGTGTCGCATTGTGGACACTACCAGGGAATTTTTCTTATACACATTTTCGGGTGTTACA | GP, SS, SI and SSp | 2D | 12,505 | - | - | - |
35 | rs41352 | TGCAGCTTGCCGCACGAAGAGACCATTGGAGCACCGCAGAGCGAGAGGCGCGGCGCGACGCACA | GP, SS, SI and A.amy | 1A | 44,512 | - | - | - |
36 | rs45884 | TGCAGGCAAGGGATCCCCTCGCAAGATTCAAGAAGCTAGGTGGGCGGCGGCGGATCTTTACCTG | L and WI | 2A | 92,517 | - | Integral component of membrane | Signal transduction; protein kinase C-activating G protein-coupled receptor signaling pathway |
37 | rs52807 | TGCAGGTCAGCAAATGCACGATGGCCGCCGCCACCTGGAGTGCTCTTCTTCAGAGCTTCTCCTC | GP, SS and SI | 2B | 33,023 | - | - | - |
38 | rs53611 | TGCAGGTCTTCGCCCTCGGCCTGAACAAGCGGCTCGCGGACGACGCCGAGATCGGAAGAGCGGG | b and Chroma | 2B | 15,931 | - | - | - |
39 | rs55558 | TGCAGGTTTTGCCTAAGAAAAACTCAGAATTCACTGGAAAAAAATCAGATTGCTGTAAACTGCA | GP, SS and SI | 4B | 61,749 | - | - | - |
40 | rs57478 | TGCAGTATGGCCACATTTGGCAATAGATTTGTTATAAACTTGACAATGGCTAAGAAGCCTCCGT | GP, SS, SI and SSp | 2A | 59,228 | - | - | - |
41 | rs63525 | TGCAGTTCGTAAGCAGAGCGGCAATATACGATATACCACTAGTATACTGTGTCACCACTGGGGT | GP, SS, SI and A.amy | 7B | 72,800 | - | - | - |