Genome-wide association study reveals the genetic architecture for calcium accumulation in grains of hexaploid wheat (Triticum aestivum L.)

Table 3 Information for stable genetic loci associated with Ca accumulation identnfied via GWAS

SNP_id^a	Chromosome	Position (Mb)^b	Region	Near locus previous reported in the same chromosome^c	Candidate genes	Annotation
SNP_id^a	Chromosome	Position (Mb)^b	(Mb)	Near locus previous reported in the same chromosome^c	Candidate genes	Annotation
AX-110013515	3B	13.97	2.15–20.50	gwm389-wPt-8093(C)	TraesCS3B02G019900	Histidine-rich calcium-binding protein
AX-110922471	3B	376.63	294.5–404.8	QGCaUE-3B	TraesCS3B02G241000	V-type proton ATPase subunit d
AX-94729264	3D	40.53	40.53	S3D_45073985	TraesCS3D02G079600	Ubiquitin family protein
AX-108912427	4A	699.57	676.78–699.57	gwm165a-wmc420	TraesCS4A02G428900	V-type proton ATPase subunit e

^a The ID of the loci linked to the significant SNP identified in the GWAS
^b The significant SNPs’ physical positions in the ‘Chinese Spring’ reference genome (IWGSC RefSeq v2.0)
^c Co-localized QTLs at this locus compared with in the literature

ISSN: 1471-2229