Table 1 Evaluation of RNA-seq data from the two soybean cultivars DN50 and QH34
Sample Name | Toral reads (million) | Reads passed QC | % Dups | % GC | Overall mapping rate | Unique mapped rate |
|---|---|---|---|---|---|---|
QH34:CK rep1 | 25.6 | 99.90% | 47.20% | 44% | 94.30% | 90.50% |
QH34:CK rep2 | 22.1 | 99.60% | 48.20% | 43% | 96.00% | 91.50% |
QH34:CK rep3 | 30.6 | 99.20% | 40.90% | 43% | 95.20% | 91.30% |
QH34:2 h rep1 | 29.0 | 99.50% | 48.80% | 43% | 95.60% | 91.40% |
QH34:2 h rep2 | 27.1 | 99.00% | 43.70% | 43% | 94.30% | 91.60% |
QH34:2 h rep3 | 27.3 | 98.90% | 48.40% | 43% | 94.50% | 91.80% |
QH34:4 h rep1 | 23.3 | 99.30% | 32.70% | 44% | 94.30% | 92.20% |
QH34:4 h rep2 | 22.1 | 99.10% | 29.30% | 44% | 94.50% | 89.70% |
QH34:4 h rep3 | 24.6 | 99.80% | 32.20% | 44% | 94.30% | 89.10% |
QH34:8 h rep1 | 23.1 | 99.60% | 29.70% | 44% | 95.30% | 89.70% |
QH34:8 h rep2 | 22.2 | 99.50% | 31.90% | 43% | 95.00% | 93.00% |
QH34:8 h rep3 | 22.1 | 98.90% | 29.30% | 44% | 94.90% | 90.90% |
DN50:CK rep1 | 29.7 | 99.10% | 60.40% | 43% | 94.10% | 90.30% |
DN50:CK rep2 | 28.0 | 99.40% | 48.40% | 42% | 95.20% | 89.20% |
DN50:CK rep3 | 20.7 | 99.40% | 39.20% | 42% | 94.60% | 91.40% |
DN50:2 h rep1 | 26.0 | 98.90% | 49.70% | 43% | 94.90% | 91.40% |
DN50:2 h rep2 | 28.1 | 98.80% | 50.00% | 43% | 94.60% | 91.70% |
DN50:2 h rep3 | 23.9 | 99.80% | 52.50% | 42% | 94.60% | 89.20% |
DN50:4 h rep1 | 25.8 | 99.40% | 49.10% | 43% | 95.10% | 90.70% |
DN50:4 h rep2 | 28.3 | 99.10% | 48.90% | 43% | 94.20% | 90.70% |
DN50:4 h rep3 | 22.0 | 98.80% | 43.30% | 43% | 94.30% | 92.20% |
DN50:8 h rep1 | 29.1 | 99.10% | 41.70% | 43% | 94.40% | 92.70% |
DN50:8 h rep2 | 23.6 | 98.90% | 46.10% | 43% | 94.30% | 89.50% |
DN50:8 h rep3 | 27.6 | 99.30% | 47.20% | 43% | 94.50% | 89.90% |
Average | 25.5 | 99.26% | 43.28% | 43% | 94.71% | 90.90% |