Skip to main content

Table 1 GIF1-interacting proteins identified in maize ears by Co-IP

From: GIF1 controls ear inflorescence architecture and floral development by regulating key genes in hormone biosynthesis and meristem determinacy in maize

Gene ID

Function or domain

No. of unique peptides

Annotation

Expression at the ear (FPKM)

Exp1

Exp2

Exp3

Zm00001d027326

ARP

8

4

9

Actin related protein 4

58.73

Zm00001d013410

10

10

3

Actin related protein 1

133.24

Zm00001d053177

11

10

2

Actin related protein 7

155.76

Zm00001d011087

13

10

4

Actin related protein 7

195.84

Zm00001d047079

Agenet domain

18

10

3

G2428-1

8.58

Zm00001d029889

22

14

2

G2428-1

12.25

Zm00001d051840

Helicase

4

4

0

RNA helicase 2

48.5

Zm00001d044540

6

3

9

DNA replication licensing factor MCM4

42.79

Zm00001d017742

GRF

1

1

1

GRF1

174.02

Zm00001d021362

1

1

1

GRF10

57.97

Zm00001d000238

1

2

1

GRF11

235.59

Zm00001d045533

1

1

1

GRF12

207.44

Zm00001d033876

1

1

1

GRF15

152.36

Zm00001d051456

2

2

1

GRF17

110.11

Zm00001d006348

1

1

1

GRF4

61.03

Zm00001d037117

1

1

1

GRF7

29.60

Zm00001d017602

1

1

1

GRF18

172.67

Zm00001d022322

SWI/SNF subunit

4

3

0

SWI/SNF component SNF12 homolog

17.40

Zm00001d007039

5

5

4

SWI/SNF component SNF12 homolog

25.78

Zm00001d013391

3

3

0

SWI/SNF complex subunit SWI3D

9.16

Zm00001d012052

RRM/RBD/RNP

2

2

0

RRM/RBD/RNP motifs protein

372.4

Zm00001d002244

3

3

2

RNA recognition motif containing protein

82.37

Zm00001d011336

hnRNP

5

4

2

Heterogeneous nuclear ribonucleoprotein A3

80.57

Zm00001d041214

ATPase

9

3

0

ATPase 4 plasma membrane type

57.64

Zm00001d038923

Small GTPase

6

6

1

Guanine nucleotide-binding protein β subunit

327.87

Zm00001d034590

3

5

0

Rho GTPase 1 mitochondrial

34.43

Zm00001d017239

4

3

0

Ran GTPase-activating protein 2

36.21

Zm00001d037004

4

4

2

Ras-related protein RABA1d

77.91

Zm00001d009572

3

4

1

Ras-related protein RABA1f

48.05

Zm00001d011855

3

5

2

Arf-GTPase-activating protein AGD11

67.93

Zm00001d022316

Protein biosynthesis and metabolism

4

2

0

Proteasome subunit alpha type

135.42

Zm00001d027896

4

4

3

Proteasome subunit alpha type

137.84

Zm00001d049230

2

3

3

SKP1-like protein 1A

880.84

Zm00001d046449

13

8

0

Elongation factor 1-alpha9

615.43

Zm00001d034856

6

6

2

Elongation factor TU

89.24

Zm00001d053196

3

5

5

Proline-tRNA ligase cytoplasmic

33.85

Zm00001d048021

Hormone-related

3

3

0

Allene oxide synthase1 (AOS1)

44.48

Zm00001d014887

4

3

3

Nana Plant2 (NA2)

215.56

Zm00001d041711

0

1

1

Auxin-binding protein 1(Abp1)

325.99

Zm00001d037700

Chaperone

9

17

11

Heat shock protein 4

41.36

Zm00001d017401

4

7

3

Hsp70-Hsp90 organizing protein 3

32.23

Zm00001d032789

9

15

2

Chaperonin2

41.26

Zm00001d050375

Regulatory molecule

14

13

4

14–3-3-like protein

410.94

Zm00001d052698

8

9

0

14–3-3-like protein GF14 nu

37.90

Zm00001d003401

9

12

2

14–3-3-like protein GF14-6

550.72

Zm00001d030968

Nucleus

0

1

4

Flowering locus K homology domain

96.52

Zm00001d042091

Developmental process

1

0

4

Flowering time control protein FY

13.25

Zm00001d024523

2

2

0

Ramosa1 enhancer locus2

87.75

Zm00001d009850

Intracellular transport

5

3

2

Importin subunit alpha

86.48

Zm00001d033734

6

6

3

Coatomer subunit alpha-1

10.78

Zm00001d007758

8

2

2

Coatomer subunit gamma

19.90

Zm00001d049155

2

1

1

Sec23/Sec24 protein

28.91

Zm00001d028143

1

1

0

COP9 signalosome complex subunit 4

62.60

Zm00001d032859

Cell division

13

7

1

Cell division control protein 48 homolog

36.74

Zm00001d014124

13

7

1

Cell division cycle protein 48

50.72

Zm00001d040429

Argonaute

2

7

1

Argonaute105

74.68

  1. EXP Experiment