Table 3 Statistics of the SMRT sequencing data with different ploidy and genome compositions hybrids
Items | F01 (AB) | F02 (AABB) | F03 (AAAB) |
|---|---|---|---|
Number of circular consensus reads | 278,855 | 290,833 | 293,637 |
Non-full-length transcripts | 244,819 | 257,816 | 258,052 |
Filtered short reads | 174 | 81 | 65 |
Number of consensus isoforms | 31,409 | 30,778 | 28,933 |
Average consensus isoforms read length | 1127 | 1710 | 1760 |
Nonredundant isoforms | 11,223 | 12,722 | 13,472 |
Gene loci | 8336 | 8767 | 9140 |
New gene loci | 270 | 206 | 259 |
New isoforms | 2746 | 4044 | 4113 |