Skip to main content

Table 2 The differentially expressed targets of N-responsive differentially expressed miRNAs

From: Nitrate/ammonium-responsive microRNA-mRNA regulatory networks affect root system architecture in Populus × canescens

 

miR_name

Up/down

Targets

log2(FC)

annotation

S1 vs. S2

ptc-miR169i_1ss15TA

up

Potri.018G064700.2

-3.71

nuclear transcription factor Y subunit A-3 (NFYA3)

mdm-miR169b_R-1

up

Potri.018G064700.2

-3.71

nuclear transcription factor Y subunit A-3 (NFYA3)

mdm-miR169b_R-1

up

Potri.017G075400.1

-1.52

serine/threonine-protein kinase AtPK2/AtPK19-like (D6PKL2)

ptc-miR169i_1ss15TA

up

Potri.017G075400.1

-1.52

serine/threonine-protein kinase AtPK2/AtPK19-like (D6PKL2)

ptc-miR393a-5p

up

Potri.001G323100.1

-9.97

Protein AUXIN SIGNALING F-BOX 2 (AFB2)

mes-MIR393b-p3_1ss21AG

up

Potri.011G060800.1

1.66

28 kDa heat- and acid-stable phosphoprotein (PDAP1)

ptc-miR6445a

up

Potri.013G079700.3

5.99

NAC domain-containing protein 14 (NAC014)

ptc-miR6445a

up

Potri.013G079700.4

12.05

NAC domain-containing protein 14 (NAC014)

ptc-miR6445a

up

Potri.013G079700.8

3.27

NAC domain-containing protein 14 (NAC014)

ptc-miR395b

up

Potri.008G159000.3

1.20

ATP sulfurylase family protein (APS1)

ptc-miR395b

up

Potri.008G159000.1

2.65

ATP sulfurylase family protein (APS1)

ptc-miR172d

up

Potri.007G046200.2

-3.20

Floral homeotic protein APETALA 2 (AP2)

ptc-miR172d

up

Potri.007G046200.1

-3.81

Floral homeotic protein APETALA 2 (AP2)

ptc-miR172d

up

Potri.005G140700.2

-1.96

Floral homeotic protein APETALA 2 (AP2)

csi-miR396a-5p_R + 1_1ss21GA

up

Potri.006G102200.4

-12.2

ERBB-3 BINDING PROTEIN 1 (EBP1)

csi-miR396a-5p_R + 1_1ss21GA

up

Potri.006G102200.3

-2.50

ERBB-3 BINDING PROTEIN 1 (EBP1)

ama-miR396-5p_R + 1_1ss19CT

up

Potri.002G082400.1

1.73

IAA-amino acid hydrolase ILR1-like 6 (ILL6)

ath-miR396b-5p_R + 1

up

Potri.006G066800.1

-10.34

topless-related protein 4-like (TPR4)

ptc-MIR1444b-p3

up

Potri.T062200.1

2.03

polyphenol oxidase, chloroplastic-like (PPO)

ptc-MIR1444b-p3

up

Potri.T061900.1

2.32

polyphenol oxidase, chloroplastic (PPO)

ptc-MIR1444b-p3

up

Potri.001G388800.1

1.77

polyphenol oxidase, chloroplastic-like (PPO)

ptc-MIR1444b-p3

up

Potri.001G387900.1

2.14

Polyphenol oxidase, chloroplastic (PE)

ptc-MIR475c-p5

up

Potri.006G259400.5

-13.3

Homeobox protein knotted-1-like 3 (KNAT3)

aly-miR159c-3p_R + 1_1ss20CT

up

Potri.002G001900.2

-6.80

protein ternary complex factor MIP1

ptc-MIR6462f-p3_1ss16TC

up

Potri.001G422300.1

-1.22

-

ptc-MIR6462d-p3_1ss7AG

up

Potri.001G422300.1

-1.22

-

ptc-MIR6462a-p3_1ss7AG

up

Potri.001G422300.1

-1.22

-

mtr-MIR2592bj-p3_1ss12TC

down

Potri.002G003600.4

1.00

PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like

S3 vs. S2

mdm-miR169b_R-1

up

Potri.009G060600.1

-10.1

Nuclear transcription factor Y subunit A-1 (NFYA1)

gma-miR6300

down

Potri.007G138600.1

-1.59

Cell cycle regulated microtubule associated protein (TPX2)

gma-miR6300_R + 1_2

down

Potri.007G138600.1

-1.59

Cell cycle regulated microtubule associated protein (TPX2)

gma-miR1511_R-2

up

Potri.004G127400.3

-1.20

-

gma-miR1511_R-2

up

Potri.008G168300.5

-2.27

protein phosphatase 2C-like protein 44

stu-miR166b_R-1_1ss19CT

up

Potri.007G119200.2

-1.72

eukaryotic translation initiation factor (eIF)

stu-miR166b_R-1_1ss19CT

up

Potri.018G045100.3

2.18

Homeobox-leucine zipper protein ATHB-8 (ATHB-8)

mtr-miR166c_2ss20TC21CT

up

Potri.018G045100.3

2.18

Homeobox-leucine zipper protein ATHB-8 (ATHB-8)

ptc-miR166a

up

Potri.018G045100.3

2.18

Homeobox-leucine zipper protein ATHB-8 (ATHB-8)

mtr-miR166c_2ss20TC21CT

up

Potri.018G045100.1

1.09

Homeobox-leucine zipper protein ATHB-8 (ATHB-8)

stu-miR166b_R-1_1ss19CT

up

Potri.018G045100.1

1.09

Homeobox-leucine zipper protein ATHB-8 (ATHB-8)

ptc-miR166a

up

Potri.018G045100.1

1.09

Homeobox-leucine zipper protein ATHB-8 (ATHB-8)