Table 4 SNP annotation result
Type | F vs M | Rp vs SP |
|---|---|---|
INTERGENIC | 211,552 | 282,100 |
INTRAGENIC | 2 | 1 |
INTRON | 1919 | 2758 |
UPSTREAM | 8730 | 11,772 |
DOWNSTREAM | 7565 | 10,735 |
UTR_5_PRIMER | 158 | 251 |
UTR_3_PRIMER | 313 | 468 |
SPLICE_SITE_ACCEPTOR | 2 | 8 |
SPLICE_SITE_DONOR | 6 | 15 |
SPLICE_SITE_REGION | 52 | 86 |
START_GAINED | 32 | 47 |
START_LOST | 0 | 2 |
NON-SYNONYMOUS-START | 1 | 0 |
SYNONYMOUS-CODING | 1104 | 1455 |
NON-SYNONYMOUS-CODING | 851 | 1283 |
STOP-GAINED | 16 | 20 |
STOP-LOST | 0 | 3 |
Other | 60,540 | 81,552 |
Total | 292,753 | 392,556 |