Table 2 Coding sequence variants identified in chickpea mutant PM405
From: Defining the mutation sites in chickpea nodulation mutants PM233 and PM405
Chromosome | GenBank Sequence | Position | Ref | Alt | GeneID | Top tBLASTn Hit | Stop | Frameshift | Syn/NonSyn |
|---|---|---|---|---|---|---|---|---|---|
Ca2 | CM003629.3 | 37,700,934 | G | T | Ca_06416 | Heat Shock Protein 90–2 | No | No | Syn |
Ca2 | CM003629.3 | 38,602,731 | CAA | CA | Ca_06500 | Predicted NLP1 | No | Yes | NonSyn |
Ca3 | CM003630.3 | 42,275,344 | C | T | Ca_09456 | Component of oligomeric protein | No | No | NonSyn |
Ca6 | CM003633.3 | 19,663,461 | A | T | Ca_18764 | Glutathione S-transferase-like protein | No | No | Syn |
Ca6 | CM003633.3 | 20,028,458 | T | G | Ca_05252 | Predicted: serine/threonine-protein kinase GRIK2-like | No | No | NonSyn |
Ca6 | CM003633.3 | 57,850,387 | TAA | – | Ca_20904 | Predicted: phosphatidylinositol/phosphatidylcholine transfer protein SFH3 | No | No | NonSyn |
Ca6 | CM003633.3 | 58,492,000 | A | C | Ca_20961 | Predicted: 4-coumarate--CoA ligase 1-like | No | No | NonSyn |
Ca7 | CM003634.3 | 36,911,781 | A | G | Ca_23613 | Predicted: ATP-dependent helicase BRM isoform X1 | No | No | Syn |
Ca7 | CM003634.3 | 6,585,411 | G | A | Ca_21616 | Uncharacterized | No | No | Syn |
Ca7 | CM003634.3 | 7,929,900 | G | A | Ca_21755 | Uncharacterized | No | No | Syn |