Fig. 2
From: Defining the mutation sites in chickpea nodulation mutants PM233 and PM405
Alignment of genomic region contigs Nanopore ICC 640 contig c636 (middle) to the desi and kabuli (top) and the M. truncatula (bottom) reference genomes. The top diagram represents the Ca5 region of interest in both the desi ICC 4958 v3.0 and kabuli CDC Frontier reference genomes, which we found to be collinear with each other in this region. The coordinates along the top bar show the positions in the desi and the kabuli (in parentheses) assemblies, respectively. In the middle diagram, the red bar indicates the CaNSP2 gene, while the yellow region is the deletional gap within PM233. The orange region is immediately upstream of, and adjacent to, the yellow deleted region and mapped adjacent to the yellow region in both chickpea (top diagram) and the M. truncatula version Mt4.0 genome assembly (bottom diagram) assemblies. The sequence block containing the orange and yellow regions and including the deletional region in PM233 resided in between the blue and green regions in contig c636 and in the M. truncatula (bottom diagram) assembly, but were positioned elsewhere in the desi and kabuli Ca5 assemblies, as shown (top diagram)