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Table 3 High propagation ability associated genes in Eucalyptus.

From: Gene expression programs during callus development in tissue culture of two Eucalyptus species

GeneID

A4 vs A3

A5 vs A3

B4 vs B3

B5 vs B3

Description

log2FC

FDR

log2FC

FDR

log2FC

FDR

log2FC

FDR

Eucgr.F00590

2.13

3.89E-07

-1.80

1.67E-05

0.09

8.85E-01

-0.57

2.90E-01

snakin-2

Eucgr.F02674

1.84

1.46E-05

-1.50

4.74E-04

-0.93

3.80E-02

-0.04

9.67E-01

putative laccase-9

Eucgr.I01646

1.02

2.50E-02

-2.61

7.28E-10

0.52

2.88E-01

0.54

3.20E-01

ribonucleoside-diphosphate reductase small chain

Eucgr.I01402

1.16

8.59E-03

-1.18

5.71E-03

2.45

4.24E-09

2.08

1.19E-06

subtilisin-like protease SBT1.6

Eucgr.I00773

1.94

3.88E-06

-1.90

6.11E-06

3.99

5.72E-20

0.12

8.73E-01

cytochrome P450 81E8

Eucgr.A02259

2.06

6.33E-06

-2.43

1.07E-05

0.68

1.78E-01

-1.44

5.13E-03

two-component response regulator ARR9

Eucgr.F03389

1.25

5.44E-03

-2.12

1.91E-06

1.71

7.18E-05

1.14

1.75E-02

uncharacterized LOC104450184

Eucgr.A01788

1.02

2.38E-02

-1.73

3.80E-05

0.42

4.01E-01

0.52

3.41E-01

protein STRUBBELIG-RECEPTOR FAMILY 3

Eucgr.J00130

1.47

8.30E-04

-1.22

6.59E-03

0.82

7.80E-02

-0.24

7.20E-01

mini-chromosome maintenance complex-binding protein

Eucgr.G01769

2.22

2.55E-07

-2.83

1.65E-09

0.78

9.25E-02

-0.31

6.38E-01

auxin transporter-like protein 5

Eucgr.A02888

1.19

7.30E-03

-2.40

1.92E-08

0.29

6.03E-01

-1.17

1.46E-02

beta-fructofuranosidase, soluble isoenzyme I

Eucgr.D02581

1.73

5.13E-05

-1.16

8.55E-03

0.70

1.32E-01

-1.47

1.21E-03

protein NUCLEAR FUSION DEFECTIVE 4

Eucgr.F02389

2.02

1.70E-06

-3.03

5.18E-12

0.82

6.87E-02

0.00

1.00E+00

lysine histidine transporter-like 8

Eucgr.C00963

3.36

1.04E-14

-1.26

5.33E-03

3.77

5.62E-18

-2.37

2.25E-07

uncharacterized LOC104436549

Eucgr.I02451

1.23

5.27E-03

-1.67

7.39E-05

0.98

2.63E-02

1.08

2.08E-02

 

Eucgr.B03374

2.55

1.52E-09

-2.41

1.56E-08

1.29

2.47E-03

0.62

2.44E-01

two-component response regulator ARR6

Eucgr.G00651

1.20

7.36E-03

-1.98

5.43E-06

0.69

2.25E-01

0.00

1.00E+00

beta-xylosidase/alpha-L-arabinofuranosidase 2

Eucgr.J02473

1.25

6.05E-03

-1.43

1.78E-03

1.89

1.70E-05

0.66

2.54E-01

F-box protein At4g35930

Eucgr.B02127

2.15

3.47E-07

-1.82

1.81E-05

2.52

1.53E-09

-0.99

3.66E-02

GRF1-interacting factor 1

Eucgr.H02960

1.39

1.30E-03

-1.81

2.04E-05

0.16

7.81E-01

-0.88

7.30E-02

acid phosphatase 1

Eucgr.I02738

1.16

9.56E-03

-1.21

5.21E-03

0.63

1.91E-01

0.32

6.04E-01

uncharacterized protein C594.04c

Eucgr.A01269

2.96

1.54E-11

-3.82

6.19E-12

8.78

2.27E-43

0.00

1.00E+00

 

Eucgr.B02620

3.95

2.73E-19

-2.09

1.40E-06

0.77

8.82E-02

-0.66

2.00E-01

defensin Ec-AMP-D2

Eucgr.C00947

1.15

1.11E-02

-1.37

1.89E-03

-0.48

3.37E-01

-2.09

1.48E-06

transcription factor MYB36

Eucgr.K01490

1.33

2.57E-03

-1.44

9.35E-04

1.28

3.32E-03

0.04

9.62E-01

short-chain type dehydrogenase/reductase

Eucgr.E00854

1.15

1.16E-02

-2.57

2.36E-08

0.38

4.74E-01

-0.28

6.84E-01

DNA primase small subunit

Eucgr.E04221

1.09

1.59E-02

-3.24

1.99E-13

-1.22

4.18E-03

-1.42

1.34E-03

 

Eucgr.H01043

1.54

3.42E-04

-1.84

1.87E-05

0.59

2.16E-01

0.20

7.66E-01

DNA replication licensing factor MCM7

Eucgr.B03659

1.93

6.45E-06

-1.16

9.24E-03

2.09

6.52E-06

0.00

1.00E+00

beta-glucosidase 12

Eucgr.B00882

1.19

7.32E-03

-1.23

4.71E-03

-0.89

4.77E-02

-2.23

4.02E-07

 

Eucgr.I01419

1.85

1.31E-05

-1.84

1.98E-05

2.47

5.37E-09

0.23

7.41E-01

probable BOI-related E3 ubiquitin-protein ligase 2

Eucgr.C00146

1.27

3.69E-03

-3.49

7.69E-16

-1.22

4.36E-03

-2.53

3.45E-09

serine carboxypeptidase-like 18

Eucgr.G01113

1.29

3.14E-03

-1.85

9.86E-06

-0.14

8.09E-01

-1.24

6.46E-03

serine carboxypeptidase-like 18

Eucgr.I01654

1.33

2.12E-03

-1.63

1.19E-04

0.98

2.61E-02

-3.55

1.70E-15

chloride channel protein CLC-b

Eucgr.B03426

1.18

7.71E-03

-1.17

6.93E-03

0.86

6.02E-02

0.18

8.00E-01

HVA22-like protein c

Eucgr.I02367

1.30

3.07E-03

-2.08

1.26E-06

0.49

3.32E-01

0.69

1.94E-01

probable LRR receptor-like serine/threonine-protein kinase At4g36180

Eucgr.C00405

1.12

1.28E-02

-2.27

1.66E-07

0.62

1.93E-01

-0.30

6.39E-01

DNA replication licensing factor MCM5

Eucgr.H04921

1.06

2.02E-02

-1.07

1.60E-02

0.09

9.47E-01

0.00

1.00E+00

G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3

Eucgr.F04160

2.30

4.37E-08

-1.51

3.56E-04

-1.02

1.95E-02

-0.15

8.22E-01

putative laccase-9

Eucgr.F02649

2.03

1.36E-06

-1.67

7.46E-05

-0.30

5.73E-01

1.10

1.71E-02

putative laccase-9

Eucgr.E01780

1.95

6.39E-06

-1.08

2.05E-02

-1.21

5.64E-03

-1.64

2.45E-04

non-specific phospholipase C3

Eucgr.C02990

1.56

2.50E-04

-2.20

1.25E-07

1.00

2.21E-02

-0.99

3.55E-02

zinc finger CCCH domain-containing protein 2

Eucgr.E00357

1.97

4.88E-06

-1.11

1.59E-02

-3.72

8.85E-14

-2.38

7.05E-07

expansin-like B1

Eucgr.K02657

-1.51

5.42E-04

1.10

1.11E-02

-0.58

3.15E-01

1.51

2.07E-03

leucoanthocyanidin reductase

Eucgr.E03884

-2.03

1.32E-06

1.62

1.09E-04

-3.69

1.12E-17

-1.80

3.07E-05

uncharacterized LOC104445607

Eucgr.B03985

-2.64

1.13E-09

2.09

6.02E-07

-1.65

9.50E-05

-2.30

1.10E-07

transcription factor MYB108

Eucgr.G00055

-1.06

2.85E-02

1.25

4.14E-03

0.00

1.00E+00

0.00

1.00E+00

 

Eucgr.B02752

-2.17

4.55E-07

1.19

5.43E-03

-0.59

2.29E-01

1.78

4.97E-05

laccase-7

Eucgr.F03488

-1.29

4.03E-03

1.15

7.78E-03

-3.35

5.45E-13

-0.84

1.05E-01

protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

Eucgr.D00536

-1.15

1.27E-02

1.81

1.80E-05

0.25

6.66E-01

-1.49

1.12E-03

GDSL esterase/lipase At5g45920

Eucgr.B02347

-1.45

1.14E-03

1.12

1.00E-02

-2.89

1.06E-10

0.64

2.37E-01

scarecrow-like protein 34