Genomic regions and candidate genes linked with Phytophthora capsici root rot resistance in chile pepper (Capsicum annuum L.)

Table 3 Genomic regions associated with Phytophthora capsici root rot resistance represented as the area under disease progress curve (AUDPC) for the New Mexico RIL (NMRIL) population

QTL	Peak SNP marker	QTL Model	Chr.	Location (Mb)	Location (cM)	LOD	1.5 LOD interval (cM)	Percent variation explained
QTL.Pc5	SCM002816.1_34981103	y = Q	P5	34.98	81.2	5.20	76.0-81.2	30.4
QTL.Pc8.1	SCM002819.1_132653758	y = Q	P8	132.65	82.9	3.10	82.93-94.0	19.7
QTL.Pc9	SCM002820.1_235989419	y = Q	P9	235.99	18.0	3.40	18.0-29.76	21.0
QTL.Pc5 x QTL.Pc8.1	SCM002816.1_34981103; SCM002819.1_132653758	y = Q1 + Q2 + Q1 x Q2	P5_P8	34.98_132.65	81.2_82.9	11.68^f (8.14^ad)	76.0-94.0	55.7 (43.3^ad)
QTL.Pc8.1 x QTL.Pc8.2	SCM002819.1_13265375; SCM002819.1_133538774	y = Q1 + Q2 + Q1 x Q2	P8_P8	132.65_133.54	82.9_78.0	6.35^ad	82.93-94.0	35.8^ad

^adAdditive effect model. Unless otherwise indicated, the percent variation explained represents the values for the full QTL model

ISSN: 1471-2229