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Table 2 Summary of SNP markers for the C. annuum linkage groups

From: Genomic regions and candidate genes linked with Phytophthora capsici root rot resistance in chile pepper (Capsicum annuum L.)

LGa Total no. of polymorphic markers Length (Mb) No. of markers without SDb Markers without SD (%) Length (cM) Freq. of SNP (per cM) Gap between adjacent SNP (max; cM) Gap between adjacent SNP (ave; cM) R2 c
1 671 300.79 131 19.5 79.6 1.6 4.2 0.61 0.19
2 860 163.94 213 24.8 139.7 1.5 6.1 0.66 0.12
3 960 261.45 271 28.2 261.7 1.0 10.2 0.97 0.72
4 468 215.67 148 31.6 94.2 1.6 8.7 0.64 0.004
5 399 217.20 66 16.5 81.2 0.8 13.5 1.23 0.10
6 592 219.19 121 20.4 78.3 1.5 9.9 0.65 0.33
7 452 222.07 54 12.0 13.4 4.0 1.9 0.25 0.01
8 578 153.27 279 48.3 159.6 1.7 7.2 0.57 0.92
9 593 238.74 248 41.8 121.9 2.0 9.2 0.49 0.53
10 552 205.61 126 22.8 53.9 2.3 7.6 0.43 0.06
11 512 219.21 222 43.4 136.1 1.6 9.7 0.61 0.35
12 610 229.92 94 10.3 58.1 1.6 7.7 0.62 0.03
Total 7,247d 2,647.06e 1,973f   1,277.7g     
  1. aLinkage group
  2. bSD- segregation distortion
  3. cCoefficient of collinearity; represented as the R2 value for the regression analysis with genetic distance (cM) as a linear function of the marker order for the physical locations of each SNP locus
  4. dTotal number of SNP markers for the SNP-B set
  5. eTotal length of map for SNP-B set (in Mb)
  6. fTotal number of SNP markers for the SNP-C set which was used for the construction of linkage map
  7. gTotal length of map for SNP-C set (in cM)