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Table 1 Allele summary and substitution types represented by the identified polymorphic SNP markers (SNP-B set) for the New Mexico RIL population

From: Genomic regions and candidate genes linked with Phytophthora capsici root rot resistance in chile pepper (Capsicum annuum L.)

Allele Number of SNP sites Frequency
 A 125,689 0.25
 T 120,652 0.24
 C 116,487 0.23
 G 115,443 0.23
Transition
 C/T 1,078 0.15
 T/C 917 0.13
 A/G 1,031 0.14
 G/A 1,003 0.14
Transversion  
 T/A 432 0.06
 A/T 399 0.06
 A/C 417 0.06
 C/A 397 0.05
 T/G 402 0.06
 G/T 388 0.05
 G/C 274 0.04
 C/G 264 0.04