Table 1 Allele summary and substitution types represented by the identified polymorphic SNP markers (SNP-B set) for the New Mexico RIL population
Allele | Number of SNP sites | Frequency |
|---|---|---|
 A | 125,689 | 0.25 |
 T | 120,652 | 0.24 |
 C | 116,487 | 0.23 |
 G | 115,443 | 0.23 |
Transition | ||
 C/T | 1,078 | 0.15 |
 T/C | 917 | 0.13 |
 A/G | 1,031 | 0.14 |
 G/A | 1,003 | 0.14 |
Transversion | Â | |
 T/A | 432 | 0.06 |
 A/T | 399 | 0.06 |
 A/C | 417 | 0.06 |
 C/A | 397 | 0.05 |
 T/G | 402 | 0.06 |
 G/T | 388 | 0.05 |
 G/C | 274 | 0.04 |
 C/G | 264 | 0.04 |