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Table 3 Evaluation of the identification capability of thirteen regions among four genera in subfamily Zingiberoideae

From: Molecular evolution of chloroplast genomes in subfamily Zingiberoideae (Zingiberaceae)

Species Bootstrap values of thirteen regions on ML trees
matK ndhF ycf1 trnK-UUU-CDS1-rps16-CDS2 psaJ
-rpl33
ycf4
-cemA
trnT-UGU-trnL-UAA-CDS1 trnT-GGU-psbD rpl32-trnL-UAG psbM-trnD-GUC ndhF
-rpl32
rps15
-ycf1
ccsA
-ndhD
G. lancangensis 62 56 66 95 64 59 60 71 92 85 56 92 93
G. marantina 99 100 99 92 80 100 92 87 98 100 99 87 71
G. multiflora 99 56 100 99 98 82 99 71 92 99 56 98 71
G. schomburgkii 89 99 99 92 98 72 99 28 100 75 91 89 96
G.schomburgkii var. angustata 89 99 99 92 98 72 99 28 100 75 91 89 96
H. coccineum 28 100 50 36 90 99 88 73 69 63 89 42 88
H. coronarium 100 27 100 36 20 26 100 100 99 100 100 26 20
H. neocarneum 28 24 82 71 17 70 30 54 29 28 31 26 14
H. spicatum 72 27 82 71 20 70 30 73 29 28 31 62 20
K. galanga 40 86 98 58 61 72 99 93 33 7 94 60 35
K. elegans 95 86 98 96 61 38 99 93 33 22 94 53 35
K. rotunda ‘Red Leaf’ 96 100 100 99 97 95 87 99 82 97 87 93 62
K. rotunda ‘Silver
Diamonds’
96 100 100 99 97 95 87 99 82 97 87 93 62
Z. montanum 63 55 56 87 84 72 84 98 54 63 56 61 35
Z. officinale 49 87 80 98 60 95 61 75 13 41 27 61 43
Z. recurvatum 85 94 100 93 94 93 100 94 91 81 44 47 21
Z. spectabile 63 98 56 86 60 72 81 64 13 89 20 53 35
Z. zerumbet 88 98 56 86 84 72 84 64 54 89 20 55 40
ratio(%) 77.78 83.33 100 88.89 83.33 88.89 88.89 88.89 66.67 72.22 66.67 77.78 44.44
  1. Note: ratio (%) = [(the total number of species-the number of species with bootstrap values below 50%) /the total number of species] × 100%; : ycf1 is here a protein coding gene in chloroplast genome. The sequenced species in this study were marked in bold