Skip to main content

Table 4 Identification of new conserved miRNA families in Brassica napus

From: Identification of miRNAs and their target genes in genic male sterility lines in Brassica napus by small RNA sequencing

bna-miRNA

Sequence

Len

Read

pre-position

bna-miR158a.1-5p

CUUUGUCUAUCGUUUGGAAAAG

22

3884

chrA08:2748114..2748220

bna-miR158a.1-3p

UUUCCAAAUGUAGACAAAGCA

21

32,292

 

bna-miR158a.2-5p

CUUUGUCUAUCGUUUGGAAAAG

22

3884

chrC08:3581242..3581348

bna-miR158a.2-3p

UUUCCAAAUGUAGACAAAGCA

21

32,292

 

bna-miR159b.1-5p

AGCUGCUAAGCUAUGGAUCCC

21

258

chrA02:9865184..9865001

bna-miR159b.1-3p

UUUGGAUUGAAGGGAGCUCUA

21

46,073

 

bna-miR159b.2-5p

AGCUGCUAAGCUAUGGAUCCC

21

258

chrA07_random:1944377..1944191

bna-miR159b.2-3p

UUUGGAUUGAAGGGAGCUCUA

21

46,073

 

bna-miR159b.3-5p

AGCUGCUAAGCUAUGGAUCCC

21

258

chrC02:19215807..19215624

bna-miR159b.3-3p

UUUGGAUUGAAGGGAGCUCUA

21

46,073

 

bna-miR159b.4-5p

AGCUGCUAAGCUAUGGAUCCC

21

258

chrC06:33954934..33954749

bna-miR159b.4-3p

UUUGGAUUGAAGGGAGCUCUA

21

46,073

 

bna-miR319a-5p

AGAGCUUCCUUGAGUCCAUUC

21

27

chrC01:10651723.. 10,651,921

bna-miR319a-3p

UUGGACUGAAGGGAGCUCCCU

21

4848

 

bna-miR319b-5p

GGAGAUUCUUUCAGUCCAGUC

21

4

chrC04:46407584.. 46,407,846

bna-miR319b-3p

UUGGACUGAAGGGAGCUCCUU

21

27,901

 

bna-miR391-5p

UUCGCAGGAGAGAUAGCGCCA

21

110

chrA10:10707678..10707812

bna-miR391-3p

ACGGUAUCUCUCCUACGUAGC

21

237

 

bna-miR398a-5p

GGGUCGACAUGAGAACACAUG

21

141

chrA03:2288822..2288945

bna-miR398a-3p

UGUGUUCUCAGGUCACCCCUG

21

9870

 

bna-miR398b-5p

GGAGUGUCAUGAGAACACGGA

21

25

chrC02:37793584..37793689

bna-miR398b-3p

UGUGUUCUCAGGUCACCCCUU

21

145

 

bna-miR400-5p

UAUGAGAGUAUUAUAAGUCAC

22

78

chrAnn_random:40582790..40582930

bna-miR400-3p

GACUUAUAAUGAUCUCAUGAA

22

237

 

bna-miR408a.1-5p

GGGAGCCAGGGAAGAGGCAGU

22

1232

chrA05:478954..479121

bna-miR408a.1-3p

UGCUUGUUCCCUGUCUCUCUC

22

1002

 

bna-miR408a.2-5p

GGGAGCCAGGGAAGAGGCAGU

22

1232

chrCnn_random:8448205..8448064

bna-miR408a.2-3p

UGCUUGUUCCCUGUCUCUCUC

22

1002

 

bna-miR9554-5p

GAAUGAUACUUGGAUAUAAUC

21

5

chrA06:19718101..19718250

bna-miR9554-3p

UCAUAUCCAAGUAUCAUUCCU

21

81

 

bna-miR9558-5p

AGAGAUGUCUGGCUUGCAACA

21

3

chrC03_random:1702602..1702746

bna-miR9558-3p

UUGCAAGCCAGACAUUUCCUUU

22

8

 

bna-miR9559-5p

UUUGGAUUUUGGUCAUUGUUG

21

5

chrAnn_random:36404086.. 36,404,194

bna-miR9559-3p

ACAAUGAACGAAAUCCAAAUC

21

3

 

bna-miR9560a-5p

ACAGGUGGUGGAACAAAUAUGAGU

25

30

chrA06:19552830..19552965

bna-miR9560a-3p

UCAUAUUAGUUCUACCUCCUGCUG

25

2

 

bna-miR9562-5p

ACUAUGCAAUUGUGAACAAAC

21

4

chrA02_random:1408210..1408358

bna-miR9562-3p

UUAUUCACAACUGCAUAAUUC

21

3

 

bna-miR9563a-5p

ACCCGUCUCUUAACUUUUAAC

22

15

chrAnn_random:9932700..9932850

bna-miR9563a-3p

UAAAAGUUAAGAGACAAGUUA

22

17

 

bna-miR9568-5p

UGCGGAUAUCUUAGGAUGAGGU

22

13

chrA03:13274664..13274813

bna-miR9568-3p

UCAUCGUAAGAGAUCUGCAUU

21

2

 

bna-miR9569-5p

UGAGUUAUCAUUGGUCUUGUG

21

1198

chrAnn_random:21855323..21855514

bna-miR9569-3p

ACACAGGAACAAUACUAACUCAUU

24

3509

 
  1. Len length of mature miRNA, pre-position the miRNA precursor sequences in chromosomes of Brassica napus, Read the total read count of all the small RNA libraries