Identification of miRNAs and their target genes in genic male sterility lines in Brassica napus by small RNA sequencing

Table 1 Overview of sRNA sequencing reads in Brassica napus

Sample	Raw reads	N% > 10%	Low quality	5^, adapter contamine	3^, adapter null or insert null	With ployA/T/G/C	Clean reads
4001B-1	24,481,718	41	16,955	8590	761,698	14,436	23,679,998
4001B-2	27,695,084	70	36,718	12,896	698,693	16,785	26,929,922
4001B-3	20,576,690	38	16,651	10,078	768,766	9577	19,771,580
4006B-1	28,457,208	131	44,382	14,481	721,967	14,232	27,662,015
4006B-2	27,355,185	45	7473	9466	895,573	11,463	26,431,165
4006B-3	35,841,966	57	25,238	16,152	1,597,289	18,301	34,184,929
6251B-1	22,307,540	36	18,341	18,038	533,864	14,517	21,722,744
6251B-2	24,409,491	46	15,603	27,336	689,062	7177	23,670,267
6251B-3	24,485,022	34	10,518	24,084	477,366	16,924	23,956,096
6284B-1	25,552,984	64	12,764	21,674	567,970	12,962	24,937,550
6284B-2	24,763,779	34	16,161	23,880	431,298	15,913	24,276,493
6284B-3	25,378,477	40	16,388	25,065	1,546,184	6044	23,784,756
4001A-1	21,968,633	56	16,757	10,355	723,740	8680	21,209,045
4001A-2	26,445,702	23	5505	11,592	1,192,819	7631	25,228,132
4001A-3	27,397,803	96	35,289	12,605	1,483,390	12,457	25,853,966
4006A-1	23,437,578	357	10,961	9403	612,982	14,712	22,789,163
4006A-2	42,675,389	50	10,345	14,879	1,018,244	21,106	41,610,765
4006A-3	27,452,096	93	40,026	12,496	749,916	14,657	26,634,908
6251A-1	21,484,268	19	17,038	20,165	462,483	17,972	20,966,591
6251A-2	24,127,081	56	12,533	20,730	464,608	24,999	23,604,155
6251A-3	21,608,183	357	7763	13,126	393,936	10,376	21,182,625
6284A-2	23,525,443	27	11,236	20,073	746,946	12,136	22,735,025
6284A-2	27,605,112	37	14,315	23,792	1,211,985	12,779	26,342,204
6284A-3	29,689,151	56	30,879	21,998	753,037	16,533	28,866,648

ISSN: 1471-2229