Expression analysis of miRNAs and their putative target genes confirm a preponderant role of transcription factors in the early response of oil palm plants to salinity stress

Salgado, Fernanda Ferreira; Vieira, Letícia Rios; Silva, Vivianny Nayse Belo; Leão, André Pereira; Grynberg, Priscila; do Carmo Costa, Marcos Mota; Togawa, Roberto Coiti; de Sousa, Carlos Antônio Ferreira; Júnior, Manoel Teixeira Souza

doi:10.1186/s12870-021-03296-9

Table 3 Profile of differentially expressed miRNA and their differentially expressed target genes from oil palm. False discovery rate (FDR), counts per milllion (CPM), and fold change (FC)

From: Expression analysis of miRNAs and their putative target genes confirm a preponderant role of transcription factors in the early response of oil palm plants to salinity stress

Target Gene					miRNA
ID^a	Expression profile	FDR	log₂FC	log₂CPM	Name	Expression profile	Probability	log₂FC
LOC105032827	UP	0.017	0.639	7.657	osa-miR159a.2	DOWN	0.96	−1.73
LOC105032890	UP	0.005	0.527	6.145	egu-miR12sds	DOWN	1.00	−5.49
LOC105034273	UP	0.007	0.710	5.881	ssp-miR827	DOWN	1.00	−2.93
LOC105035262	UP	0.020	0.500	6.502	atr-miR393	DOWN	0.98	−0.92
LOC105039459	UP	0.029	1.704	−0.968	bdi-miR529-5p	DOWN	1.00	−2.30
LOC105040914	UP	0.047	0.451	4.664	egu-miR03sds	DOWN	1.00	−2.23
LOC105043377	UP	0.000	1.670	5.767	ssp-miR827	DOWN	1.00	−2.93
LOC105043768	UP	0.008	0.530	7.110	atr-miR319e	DOWN	0.99	−1.93
LOC105043777	UP	0.001	0.591	6.996	vvi-miR828a	DOWN	1.00	−1.87
LOC105046708	UP	0.047	0.823	1.782	ata-miR166d-3p	DOWN	1.00	−2.51
LOC105046708	UP	0.047	0.823	1.782	atr-miR166b	DOWN	1.00	−2.76
LOC105046708	UP	0.047	0.823	1.782	osa-miR166i-3p	DOWN	1.00	−2.92
LOC105046708	UP	0.047	0.823	1.782	sly-miR166c-3p	DOWN	1.00	−1.76
LOC105047586	UP	0.000	1.863	0.439	bra-miR168a-5p	DOWN	1.00	−2.32
LOC105047586	UP	0.000	1.863	0.439	bra-miR168c-5p	DOWN	1.00	−1.83
LOC105048659	UP	0.013	0.705	3.253	egu-miR24sds	DOWN	0.95	−1.51
LOC105050858	UP	0.001	0.699	5.484	egu-miR11sds	DOWN	1.00	−4.26
LOC105051200	UP	0.001	1.303	2.815	atr-miR535	DOWN	1.00	−1.09
LOC105052568	UP	0.002	0.836	5.573	mtr-miR2673b	DOWN	1.00	−6.43
LOC105054175	UP	0.047	1.208	0.522	ata-miR396b-5p	DOWN	1.00	−2.53
LOC105054413	UP	0.000	1.031	5.014	osa-miR2118p	DOWN	1.00	−0.81
LOC105055689	UP	0.000	0.921	4.005	egu-miR18sds	DOWN	0.99	−2.72
LOC105056468	UP	0.000	1.366	4.716	ata-miR169d-5p	DOWN	0.98	−2.57
LOC105056609	UP	0.008	1.037	2.980	ata-miR167d-5p	DOWN	1.00	−2.55
LOC105059001	UP	0.016	0.514	4.698	egu-miR03sds	DOWN	1.00	−2.23
LOC105059776	UP	0.009	0.654	4.620	egu-miR27sds	NDE^b	NDE	NDE
LOC105059810	UP	0.045	0.419	5.282	egu-miR09sds	DOWN	1.00	−3.22
LOC109505530	UP	0.000	2.950	−0.450	aof-miR536	DOWN	1.00	−3.55
LOC105031985	DOWN	0.000	−1.367	3.216	egu-miR18sds	DOWN	0.99	−2.72
LOC105032107	DOWN	0.006	−0.512	5.732	mes-miR393d	DOWN	1.00	−1.48
LOC105033129	DOWN	0.002	−0.622	4.658	egu-miR17sds	DOWN	0.99	−4.15
LOC105034164	DOWN	0.000	−1.053	5.714	ata-miR172b-3p	DOWN	0.98	−1.27
LOC105035561	DOWN	0.000	−1.006	3.118	ata-miR399a-3p	DOWN	1.00	−8.83
LOC105038401	DOWN	0.000	−0.902	3.311	egu-miR10sds	DOWN	1.00	−2.95
LOC105039220	DOWN	0.004	−0.617	4.451	aof-miR391	DOWN	1.00	−6.71
LOC105041147	DOWN	0.000	−0.834	3.888	egu-miR09sds	DOWN	1.00	−3.22
LOC105043694	DOWN	0.000	−1.320	4.891	aof-miR536	DOWN	1.00	−3.55
LOC105046087	DOWN	0.035	−0.596	7.237	egu-miR07sds	DOWN	1.00	−2.05
LOC105046096	DOWN	0.037	−0.493	4.096	egu-miR24sds	DOWN	0.95	−1.51
LOC105048141	DOWN	0.000	−1.356	2.377	egu-miR21sds	DOWN	0.98	−2.78
LOC105048606	DOWN	0.000	−2.036	2.656	ata-miR395c-3p	DOWN	1.00	−2.65
LOC105048718	DOWN	0.022	−0.434	5.325	egu-miR03sds	DOWN	1.00	−2.23
LOC105048722	DOWN	0.000	−0.948	3.893	egu-miR08sds	DOWN	1.00	−2.50
LOC105048783	DOWN	0.038	−1.133	2.064	ata-miR171a-3p	DOWN	0.99	−3.64
LOC105049211	DOWN	0.005	−0.757	3.512	ata-miR167d-5p	DOWN	1.00	−2.55
LOC105052116	DOWN	0.006	−0.515	5.757	egu-miR04sds	DOWN	1.00	−9.11
LOC105054869	DOWN	0.011	−0.624	3.628	egu-miR23sds	DOWN	0.96	−1.65
LOC105054987	DOWN	0.000	−0.990	5.245	mdm-miR171b	DOWN	1.00	−1.94
LOC105054987	DOWN	0.000	−0.990	5.245	vvi-miR171j	DOWN	0.99	−2.74
LOC105057798	DOWN	0.018	−1.098	2.516	osa-miR159a.2	DOWN	0.96	−1.73
LOC105058639	DOWN	0.001	−0.688	4.776	gma-miR482a-3p	NDE	NDE	NDE
LOC105059511	DOWN	0.000	−1.281	3.868	mdm-miR171b	DOWN	1.00	−1.94
LOC105059511	DOWN	0.000	−1.281	3.868	vvi-miR171j	DOWN	0.99	−2.74
LOC105060969	DOWN	0.000	−1.382	1.982	vvi-miR171j	DOWN	0.99	−2.74
LOC105061136	DOWN	0.007	−0.578	3.982	egu-miR18sds	DOWN	0.99	−2.72
LOC105061318	DOWN	0.002	−1.663	0.209	ata-miR396b-5p	DOWN	1.00	−2.53
LOC105061572	DOWN	0.038	−0.470	4.505	egu-miR07sds	DOWN	1.00	−2.05

^a BioProject PRJNA192219 and BioSample SAMN02981535, available at NCBI; ^b NDE non differentially expressed

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ISSN: 1471-2229

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