Table 2 Statistics of RNA-Seq data from six samples of oil palm plants submitted to two treatments (0 and 2 g of NaCl per 100 g of the substrate); three replicates per treatment. Mapping to reference genome EG5 (BioProject PRJNA192219 and BioSample SAMN02981535) available at NCBI
Sample | Control_R1 | Control_R2 | Control_R3 | Stressed_R1 | Stressed_R2 | Stressed_R3 |
|---|---|---|---|---|---|---|
Input Read Pairs | 30,974,342 | 32,078,783 | 21,419,898 | 21,159,877 | 22,423,080 | 23,655,116 |
Both Surviving Reads | 28,199,684 / 91.04% | 28,906,033 / 90.11% | 19,458,233 / 90.84% | 19,244,188 / 90.95% | 20,264,942 / 90.38% | 21,601,656 / 91.32% |
Uniquely Mapped Reads | 26,504,692 / 93.989% | 27,293,855 / 94.423% | 17,156,499 / 88.171% | 17,076,951 / 88.738% | 17,363,794 / 85.684% | 19,753,290 / 91.443% |
Average Mapped Length | 294.02 | 294.58 | 295.41 | 295.44 | 295.79 | 295.68 |
Reads Mapped to Multiple Loci | 730,067 / 2.589% | 654,325 / 2.264% | 1,775,953 / 9.127% | 1,621,318 / 8.425% | 2,403,469 / 11.86% | 1,270,546 / 5.882% |
Reads Aligned to Feature of Type ‘gene’a | 24,370,328 / 86.72% | 25,185,822 / 87.68% | 15,143,708 / 72.45% | 14,791,141 / 72.16% | 13,979,922 / 62.26% | 17,597,354 / 78.43% |
Reads Not Aligned to Feature | 1,701,727 / 6.06% | 1,665,256 / 5.80% | 1,758,058 / 8.41% | 2,081,861 / 10.16% | 3,185,020 / 14.18% | 1,930,248 / 8.60% |
Reads Aligned to More Than One Feature | 1,599,065 / 5.69% | 1,432,045 / 4.99% | 3,746,405 / 17.92% | 3,421,162 / 16.69% | 5,091,435 / 22.67% | 2,683,016 / 11.96% |