Table 1 New miRNAs identified in the oil palm (Elaeis guineensis) genome
miRNA Name | Shortstack cord | Location | Gene IDa | Gene description |
|---|---|---|---|---|
egu-miR01sds | NC_025994.1:56908176–56,908,276 | intragenic | LOC105039763 | 26S proteasome non-ATPase regulatory subunit 8 homolog A |
egu-miR01sds | NW_011550933.1:850430–850,534 | intragenic | LOC105061524 | ubiquitin carboxyl-terminal hydrolase 3 |
egu-miR02sds | NC_025996.1:22888879–22,888,988 | intragenic | LOC105042830 | E3 ubiquitin-protein ligase HAKAI homolog |
egu-miR03sds | NC_025997.1:33290362–33,290,493 | intragenic | LOC105045464 | hydroxymethylglutaryl-CoA lyase, mitochondrial |
egu-miR04sds | NC_025998.1:32639960–32,640,067 | intergenic | NA | NA |
egu-miR05sds | NC_026000.1:8768033–8,768,169 | intergenic | NA | NA |
egu-miR06sds | NC_026001.1:23573097–23,573,199 | intragenic | LOC105051421 | plant UBX domain-containing protein 11 |
egu-miR07sds | NW_011552138.1:10926–10,993 | intragenic | LOC105035654 | probable peptide/nitrate transporter At3g43790 |
egu-miR07sds | NC_026007.1:3222601–3,222,690 | intergenic | NA | NA |
egu-miR08sds | NW_011551761.1:8894–9002 | intragenic | LOC105035396 | probable DNA helicase MCM8 |
egu-miR09sds | NW_011553407.1:22959–23,079 | intragenic | LOC105036110 | vesicle-associated membrane protein 721 |
egu-miR10sds | NW_011552437.1:17925–18,039 | intergenic | NA | NA |
egu-miR11sds | NC_025995.1:12779980–12,780,080 | intragenic | LOC105040786 | serine/threonine-protein phosphatase PP1 |
egu-miR12sds | NC_026007.1:23368340–23,368,461 | intergenic | NA | NA |
egu-miR13sds | NC_025996.1:46674015–46,674,106 | intergenic | NA | NA |
egu-miR14sds | NC_026002.1:30893315–30,893,427 | intragenic | LOC105053431 | E3 ubiquitin protein ligase DRIP2 |
egu-miR14sds | NC_026001.1:19506680–19,506,793 | intergenic | NA | NA |
egu-miR14sds | NC_025997.1:18353407–18,353,516 | intergenic | NA | NA |
egu-miR14sds | NW_011550939.1:17612–17,724 | intragenic | LOC105031979 | probable GDP-L-fucose synthase 1 |
egu-miR14sds | NW_011551049.1:134162–134,274 | intragenic | LOC105033684 | mevalonate kinase |
egu-miR15sds | NC_026003.1:10876077–10,876,178 | intragenic | LOC105053747 | 26S proteasome non-ATPase regulatory subunit 2 homolog A |
egu-miR16sds | NC_025993.1:8597526–8,597,635 | intragenic | LOC105039415 | uncharacterized LOC105039415 – lncRNA |
egu-miR17sds | NW_011551539.1:60051–60,120 | intragenic | LOC105035181 | uncharacterized LOC105035181 – lncRNA |
egu-miR18sds | NC_025997.1:42070048–42,070,195 | intergenic | NA | NA |
egu-miR19sds | NC_026006.1:8032758–8,032,862 | intragenic | LOC105057555 | UPF0496 protein At5g66675-like |
egu-miR20sds | NW_011551034.1:756120–756,299 | intragenic | LOC105033525 | histone-lysine N-methyltransferase ATXR2 |
egu-miR21sds | NC_025994.1:23652674–23,652,776 | intragenic | LOC105038330 | transcription factor VIP1 |
egu-miR22sds | NC_025996.1:56111754–56,112,020 | intragenic | LOC105044280 | uncharacterized LOC105044280 - protein coding |
egu-miR23sds | NC_026002.1:13066673–13,066,777 | intergenic | NA | NA |
egu-miR24sds | NC_025996.1:46873993–46,874,094 | intragenic | LOC105043881 | ATP-dependent DNA helicase SRS2-like protein At4g25120 |
egu-miR25sds | NW_011551090.1:713220–713,417 | intragenic | LOC105034003 | ubiquitin receptor RAD23d |
egu-miR26sds | NC_025993.1:37595103–37,595,199 | intragenic | LOC105054928 | uncharacterized LOC105054928 – protein coding |
egu-miR27sds | NC_025996.1:40372686–40,372,807 | intragenic | LOC105043419 | shaggy-related protein kinase epsilon |