Table 9 List of SNP variation identified in rice landraces for potential use as molecular markers in drought rice breeding
From: Association mapping of drought tolerance and agronomic traits in rice (Oryza sativa L.) landraces
Trait Association (Marker linked) | Chr. Phys. position (Mb) a | Elite allele | Position (Mb) | Landrace allele | Landrace allele present in |
|---|---|---|---|---|---|
PH/RL (RM1032) | CHR1 9318264–9318812 | C A | 9318278 9318295 | T C | PTB 8 |
SPAD/ Chl/ SLA (RM5633) | CHR4 13083892–13084502 | C T C | 13083944 13083963 13084032 | N N N | All four accessions: PTB8, Kalladiyar, Gandhakashala, Jeerakashala |
PH/CID/SLA/1000GW (RM5961) | CHR11 19926456–1926984 | T | 19926506 | N K G | PTB51, PTB25 Gandhakashala PTB26 |
A | 19926513 | N R G | PTB51, PTB25 Gandhakashala PTB26 | ||
SF RM1031 | CHR6 31082906–31089743 | R | 31089179 | A G R | Kalladiyar PTB2, 10, 25 and 26, Gandhakashala, Jeerakashala PTB8, Chomala |