From: Association mapping of drought tolerance and agronomic traits in rice (Oryza sativa L.) landraces
Chr. (Physical position in Mba) | Marker located | Reference Allele | Alt Allele | Position (Mb) | SNP type | Traits associated in MLM approach |
---|---|---|---|---|---|---|
CHR1 (9318264–9318812) | RM1032 | T C | C A | 9318278 9318295 | Up-stream gene variant Intergenic region variant | PH, RL (Panel II) |
CHR4 (13083892–13084502) | RM5633 | T A A | C T C | 13083944 13083963 13084032 | Intergenic region variant Intergenic region variant Intergenic region variant | DSI, RYR (Panel I) SPAD, Chl, SLA (Panel II) |
CHR6 (31082906–31089743) | RM1031 | G | A | 31089179 | Down-stream gene variant | SF (Panel I) |
CHR11 (19926456–19926984) | RM5961 | T A | G G | 19926506 19926513 | Down-stream gene variant Down-stream gene variant | 1000GW (Panel I) PH, CID, SLA (Panel II) |