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Table 2 Analysis of variance and significant levels for genotypic (G) and environmental effects due to location (E) for tested lines and combined effects for the pseudoqualitative and quantitative traits evaluated

From: Genome wide association mapping for agronomic, fruit quality, and root architectural traits in tomato under organic farming conditions

Trait acronym

Genotype (G) df = 243

Locality (E) df = 1

G × E df = 243

Error df = 976

TSS%

F

TSS%

F

TSS%

F

TSS%

Morphological plant and fruit descriptors

 FD

44.90

4.59***

0.00

0.00NS

15.91

1.63***

39.20

 PV

31.36

2.78***

1.64

35.42***

21.77

1.93***

45.23

 LI

69.07

10.23***

0.39

13.88***

3.35

0.50NS

27.20

 SP

45.19

5.19***

4.90

136.77***

14.85

1.71***

35.05

 FSs

24.09

4.17***

36.10

1518.59***

16.60

2.87***

23.21

 GS

66.64

11.16***

0.16

6.35*

9.23

1.55***

23.98

 PA

58.40

8.24***

2.30

78.79***

10.86

1.53***

28.45

 FF

37.56

4.55***

11.61

342.05***

17.75

2.15***

33.09

Agronomic traits

 RC

68.28

16.61***

7.25

428.77***

7.94

1.93***

16.52

 RK

43.17

4.32***

0.95

23.16***

15.78

1.58***

40.10

 CC

38.30

3.32***

1.05

22.22***

14.36

1.25*

46.28

 FFA

39.27

8.24***

10.28

524.25***

31.30

6.57***

19.14

 BR

21.93

1.42***

0.02

0.39NS

16.19

1.05NS

61.86

 PF

20.61

1.51***

5.48

97.51***

19.07

1.40***

54.84

 PFr

20.74

1.28**

1.01

15.10***

13.04

0.80NS

65.21

 DF

18.05

1.23*

3.89

64.10***

18.88

1.28**

59.19

 DFr

13.11

0.87NS

12.45

201.81***

14.23

0.95NS

60.21

 LN

68.68

12.46***

0.13

5.70*

9.05

1.64***

22.14

 RE

57.66

13.47***

16.92

960.29***

7.53

1.76***

17.89

 RU

22.02

1.62***

0.33

5.85*

23.12

1.70***

54.54

 FW

81.05

23.88***

1.08

77.20***

4.24

1.25*

13.63

 TY

46.03

5.62***

10.54

312.72***

10.55

1.29**

32.88

 FST

70.89

15.59***

2.97

158.92***

7.87

1.73***

18.26

 SS

52.79

7.69***

10.91

386.10***

8.77

1.28**

27.54

 PH

41.27

3.73***

0.22

4.84*

13.30

1.21*

45.21

 AC

33.39

4.55***

22.26

740.28***

14.74

2.04***

29.61

Root characterization

 RA

23.02

1.61***

0.16

2.76NS

19.39

1.36***

57.43

 RL

13.58

1.62***

41.36

1198.90***

11.39

1.36***

33.67

 RD

18.83

2.74***

42.82

1517.60***

10.83

1.58***

27.53

 DMR

31.48

2.61***

4.66

93.90***

15.47

1.28**

48.39

 DR

33.03

3.14***

6.42

148.17***

18.26

1.73***

42.29

  1. *, **, ***, significant at P < 0.05, P < 0.01, P < 0.001, respectively; NS not significant
  2. df degrees of freedom, TSS total sum of squares, F F ratio
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BMC Plant Biology

ISSN: 1471-2229

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