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Table 1 Descriptive statistics for pseudoqualitative and quantitative traits, broad sense heritability (H2), phenotypic and genotypic coefficients of variation (PCV and GCV, respectively), and genetic advance as percent of population mean (GAM), for traits analysed in two environments (Alcasser, Spain; Monsampolo del Tronto, Italy) on 244 tomato cultivars

From: Genome wide association mapping for agronomic, fruit quality, and root architectural traits in tomato under organic farming conditions

Trait

Acronym

Rsquare

Fratio

Prob > Fa

H2

PCV

GCV

GAM

Morphological plant and fruit descriptors

 Foliage Density

FD

0.45

4.09

***

44.89

48.77

43.72

24.59

 Plant Vigor

PV

0.31

2.29

***

31.36

46.59

38.87

18.28

 Leafy Inflorescence

LI

0.69

11.23

***

69.11

102.00

97.74

68.21

 Style Position

SP

0.45

4.14

***

45.21

89.31

80.16

45.24

 Fruit Set Sequence

FSs

0.24

1.59

***

24.09

53.03

41.57

16.78

 Green Shoulder

GS

0.67

10.03

***

66.64

143.52

136.86

93.81

 Puffiness Appearance

PA

0.58

7.05

***

58.40

163.81

153.29

98.36

 Fruit Firmness

FF

0.38

3.02

***

37.54

47.10

40.82

21.00

Agronomic traits

 Ribbing at Calyx End

RC

0.68

10.81

***

68.29

99.75

95.43

66.21

 Radial Cracking

RK

0.43

3.81

***

43.17

115.03

102.38

56.48

 Concentric Cracking

CC

0.38

3.12

***

38.30

146.12

127.14

66.06

 Fruit fasciation

FFA

0.39

3.25

***

39.27

134.91

117.96

62.07

 Blossom-end Rot

BR

0.22

1.41

***

21.94

100.86

77.16

30.35

 Pests in Foliage

PF

0.21

1.30

**

20.61

88.76

66.77

25.45

 Pests in Fruits

PFr

0.21

1.31

**

20.74

111.32

83.88

32.07

 Disease in Foliage

DF

0.18

1.11

NS

18.05

97.85

70.91

25.29

 Disease in Fruits

DFr

0.13

0.76

NS

13.11

104.98

68.92

20.95

 Locules number

LN

0.69

11.01

***

68.68

124.40

119.11

82.88

 Ripening Earliness

RE

0.58

6.95

***

58.07

30.68

28.68

18.35

 Ripening Uniformity

RU

0.22

1.42

***

22.02

114.37

87.58

34.50

 Fruit Weight

FW

0.81

21.47

***

81.05

176.72

172.74

130.54

 Total Yield

TY

0.46

4.28

***

46.03

103.60

93.28

53.10

 Fruits Set/ Truss

FST

0.71

12.23

***

70.89

166.40

159.99

110.73

 Soluble solids content

SS

0.53

5.61

***

52.77

39.04

35.97

21.94

 pH

PH

0.42

3.58

***

41.61

9.56

8.45

4.57

 Acidity

AC

0.33

2.51

***

33.36

52.38

44.31

21.44

Root characterization

 Radicular Crown Angle

RA

0.23

1.50

***

23.02

29.66

22.98

9.26

 Length of 3 Largest Roots

RL

0.14

0.79

NS

13.58

49.89

33.13

10.25

 Diameter of 3 Largest Roots

RD

0.19

1.16

NS

18.83

60.00

44.01

16.03

 Diameter of Main Root

DMR

0.31

2.30

***

31.46

52.43

43.78

20.61

 Density of Fine Roots

DR

0.33

2.48

***

33.03

68.00

57.39

27.69

  1. a ***, ** indicate significance at P < 0.001, P < 0.01, respectively; NS not significant