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Table 1 Differentially expressed genes in the plant-circadian during flower bud stage

From: Integrated analysis of mRNA-seq and miRNA-seq reveals the advantage of polyploid Solidago canadensis in sexual reproduction

Gene Identifer

Gene Name

log2(Fold Change)

UP/DOWN

CCA1

CL7858.Contig1_All

−5.86

down

CDF1

CL8491.Contig1_All

3.19

up

CDF1

CL7233.Contig2_All

1.82

up

CDF1

CL8396.Contig2_All

−1.76

down

CDF1

CL7233.Contig3_All

−4.00

down

CHE

CL6494.Contig1_All

3.43

up

CHE

CL12062.Contig1_All

2.92

up

CHE

CL11296.Contig1_All

2.38

up

CHE

CL2760.Contig2_All

2.15

up

CHE

Unigene11750_All

− 2.98

down

CHS

CL657.Contig2_All

5.52

up

CHS

CL14895.Contig7_All

3.13

up

CHS

CL657.Contig6_All

−1.39

down

CHS

CL657.Contig5_All

−3.20

down

CHS

CL657.Contig1_All

−3.45

down

CHS

CL14895.Contig8_All

−3.49

down

CHS

CL657.Contig3_All

−4.55

down

CK2b

CL12797.Contig4_All

1.93

up

CK2b

CL3344.Contig2_All

−3.45

down

CK2α

Unigene40721_All

1.20

up

CK2α

CL5122.Contig1_All

−5.14

down

CK3α

CL5122.Contig2_All

−1.71

down

CK4α

CL5450.Contig1_All

1.13

up

CK5α

CL6117.Contig1_All

4.06

up

CK6α

CL6117.Contig2_All

1.37

up

CK7α

CL8572.Contig1_All

1.66

up

CK8α

CL8572.Contig2_All

−1.39

down

CO

CL9716.Contig2_All

5.29

up

CO

CL3756.Contig2_All

2.23

up

CO

Unigene56230_All

1.91

up

CO

CL15403.Contig1_All

1.90

up

CO

CL6412.Contig4_All

1.60

up

CO

CL4613.Contig1_All

−1.90

down

CO

CL6412.Contig3_All

−3.46

down

CRY

CL4897.Contig3_All

−1.80

down

GI

CL4000.Contig2_All

4.31

up

GI

CL4000.Contig1_All

2.91

up

HY5

Unigene48602_All

−1.94

down

HY5

CL16959.Contig2_All

−3.53

down

HY5

CL18750.Contig1_All

−4.64

down

HY5

CL19480.Contig4_All

1.65

up

HY5

CL19480.Contig7_All

−3.95

down

LHY

CL270.Contig10_All

1.73

up

LHY

CL7858.Contig2_All

1.09

up

LHY

Unigene40243_All

1.04

up

LHY

CL487.Contig3_All

−1.26

down

LHY

CL447.Contig5_All

−3.06

down

LHY

CL7858.Contig1_All

−5.86

down

PHYB

CL6361.Contig2_All

5.99

up

PHYB

CL12517.Contig3_All

5.03

up

PHYB

Unigene81014_All

4.04

up

PHYB

CL6361.Contig1_All

3.83

up

PHYB

CL9505.Contig4_All

2.79

up

PHYB

CL7348.Contig4_All

−1.71

down

PHYB

CL8822.Contig3_All

−4.64

down

PIF3

Unigene175_All

4.40

up

PIF3

CL6913.Contig1_All

4.20

up

PIF3

CL7457.Contig2_All

3.97

up

PIF3

CL1280.Contig2_All

2.88

up

PIF3

Unigene95348_All

2.74

up

PIF3

CL4218.Contig1_All

2.43

up

PIF3

CL11226.Contig3_All

2.05

up

PIF3

CL4218.Contig3_All

1.83

up

PIF3

Unigene33236_All

−1.04

down

PIF3

CL18653.Contig4_All

−2.40

down

PIF3

CL7457.Contig1_All

−3.51

down

PIF3

CL17590.Contig4_All

−4.22

down

PIF3

Unigene44150_All

−4.26

down

PIF3

CL1280.Contig3_All

−5.69

down

PRR5

CL6647.Contig2_All

2.51

up

PRR5

Unigene56230_All

1.91

up

PRR7

CL19525.Contig10_All

5.57

up

PRR7

CL19525.Contig13_All

5.04

up

PRR7

CL6647.Contig2_All

2.51

up

PRR7

CL2037.Contig3_All

1.67

up

PRR7

CL12994.Contig10_All

−3.03

down

PRR7

CL6647.Contig4_All

− 3.33

down

ZTL

CL14110.Contig2_All

4.68

up

ZTL

CL14110.Contig1_All

−2.82

down