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Fig. 6 | BMC Plant Biology

Fig. 6

From: Phylogenetic analysis and development of molecular markers for five medicinal Alpinia species based on complete plastome sequences

Fig. 6

Phylogenetic trees based on common genes identified using HybPiper pipeline and the shared DNA sequences of 77 protein-coding genes in the plastomes for the same five species. The phylogenetic tree on the left panel was constructed with the sequences of 4 shared contigs for nuclear genes present in 4 Alpinia species found by the HybPiper pipeline using the maximum likelihood method implemented in Phylosuite. The Oryza sativa L. was used as the outgroup. Bootstrap support scores were calculated from 1000 replicates. And the phylogenetic tree on the right panel was constructed with the shared DNA sequences of 77 protein-coding genes in the plastomes of the same five species in the nuclear tree using the same methods in phylogenomic analysis

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