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Table 2 Number of differentially expressed genes (DEGs) and corresponding pathways in leaf and root of salt tolerant ‘Halo’ and salt intolerant ‘Vernal’ alfalfa cultivars at 0, 3 and 27 h of salt stress

From: Transcriptomic analysis of differentially expressed genes in leaves and roots of two alfalfa (Medicago sativa L.) cultivars with different salt tolerance

Pathway ID

The number of differentially expressed genes

Pathway terms

HL0vsVL0

HL3vsVL3

HL27vsVL27

HR0vsVR0

HR3vsVR3

HR27vsVR27

K00130

0

0

0

1

1

1

betB, gbsA; betaine-aldehyde dehydrogenase

K00276

0

0

1

0

0

0

AOC3, AOC2, tynA; primary-amine oxidase

K00430

0

0

1

0

0

0

E1.11.1.7; peroxidase

K00454

0

0

1

0

0

0

LOX2S; lipoxygenase

K00522

0

0

1

0

0

0

FTH1; ferritin heavy chain

K00549

1

1

1

1

1

1

metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

K00660

0

0

0

0

0

1

CHS; chalcone synthase

K00915

0

0

0

1

0

0

IPMK, IPK2; inositol-polyphosphate multikinase

K01507

0

0

0

1

1

1

ppa; inorganic pyrophosphatase

K01535

0

0

1

1

0

0

PMA1, PMA2; H+-transporting ATPase

K01623

0

0

0

1

1

0

ALDO; fructose-bisphosphate aldolase, class I

K01823

1

1

1

1

1

0

idi, IDI; isopentenyl-diphosphate Delta-isomerase

K01859

0

0

0

0

0

1

E5.5.1.6; chalcone isomerase

K02639

1

1

2

1

1

0

petF; ferredoxin

K02721

1

0

1

0

0

0

psbW; photosystem II PsbW protein

K02893

1

0

0

1

2

1

RP-L23Ae, RPL23A; large subunit ribosomal protein L23Ae

K02906

0

0

1

0

0

0

RP-L3, MRPL3, rplC; large subunit ribosomal protein L3

K02925

0

0

1

0

0

0

RP-L3e, RPL3; large subunit ribosomal protein L3e

K02971

0

0

1

1

1

0

RP-S21e, RPS21; small subunit ribosomal protein S21e

K02981

0

0

0

1

0

0

RP-S2e, RPS2; small subunit ribosomal protein S2e

K02985

1

0

0

0

0

0

RP-S3e, RPS3; small subunit ribosomal protein S3e

K02991

0

0

0

1

1

0

RP-S6e, RPS6; small subunit ribosomal protein S6e

K03231

2

2

2

2

2

2

EEF1A; elongation factor 1-alpha

K03283

0

0

0

0

0

1

HSPA1s; heat shock 70kDa protein 1/2/6/8

K03364

0

0

1

0

0

0

CDH1; cell division cycle 20-like protein 1, cofactor of APC complex

K05546

0

0

0

1

1

0

GANAB; mannosyl-oligosaccharide alpha-1,3-glucosidase

K06617

0

0

0

0

1

0

E2.4.1.82; raffinose synthase

K07374

0

0

0

1

0

0

TUBA; tubulin alpha

K07466

1

1

1

1

1

0

RFA1, RPA1, rpa; replication factor A1

K08678

0

0

0

1

0

0

UXS1, uxs; UDP-glucuronate decarboxylase

K09495

1

1

1

1

1

1

CCT3, TRIC5; T-complex protein 1 subunit gamma

K09588

0

1

0

0

0

0

CYP90A1, CPD; cytochrome P450 family 90 subfamily A1

K09645

0

0

0

1

0

0

CPVL; vitellogenic carboxypeptidase-like protein

K10534

0

0

0

0

1

0

NR; nitrate reductase (NAD(P)H)

K10573

0

0

0

0

0

1

UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A

K10767

0

0

0

1

0

0

ALKBH5; mRNA N6-methyladenine demethylase

K11717

0

0

0

0

0

1

sufS; cysteine desulfurase / selenocysteine lyase

K12130

0

1

1

0

0

0

PRR5; pseudo-response regulator 5

K12236

1

1

1

1

1

1

NFX1; transcriptional repressor NF-X1

K12741

0

0

0

0

1

0

HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

K12891

0

1

0

0

0

0

SFRS2; splicing factor, arginine/serine-rich 2

K13946

0

0

1

1

1

0

AUX1, LAX; auxin influx carrier (AUX1 LAX family)

K13963

0

0

0

1

1

0

SERPINB; serpin B

K14315

0

1

1

1

1

0

NDC1, TMEM48; nucleoporin NDC1

K14404

0

0

0

0

1

0

CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4

K14488

0

0

0

0

1

0

SAUR; SAUR family protein

K14504

0

0

0

0

0

1

TCH4; xyloglucan:xyloglucosyl transferase TCH4

K14568

0

0

1

1

1

1

EMG1, NEP1; rRNA small subunit pseudouridine methyltransferase Nep1

K14842

0

0

0

1

0

0

NSA2; ribosome biogenesis protein NSA2

K15281

0

0

0

1

0

0

SLC35D; solute carrier family 35

K15378

0

1

0

0

1

0

SLC45A1_2_4; solute carrier family 45, member 1/2/4

K15397

1

0

0

0

0

0

KCS; 3-ketoacyl-CoA synthase

K15747

1

0

1

0

0

0

LUT5, CYP97A3; beta-ring hydroxylase

K16298

0

0

1

1

1

0

SCPL-IV; serine carboxypeptidase-like clade IV

K17525

1

0

1

0

0

0

CHID1; chitinase domain-containing protein 1

K17592

0

0

0

0

1

0

SACS; sacsin

K17679

0

0

0

1

0

0

MSS116; ATP-dependent RNA helicase MSS116, mitochondrial

K18270

0

0

0

1

0

0

RAB3GAP1; Rab3 GTPase-activating protein catalytic subunit

K18857

0

0

0

1

1

0

ADH1; alcohol dehydrogenase class-P

K20471

0

0

1

0

0

0

COPD, ARCN1, RET2; coatomer subunit delta

K20628

1

0

0

0

1

0

exlX; expansin

K20726

0

1

1

1

1

1

TMEM222; transmembrane protein 222

K21797

0

0

1

1

0

0

SAC1, SACM1L; phosphatidylinositol 4-phosphatase

K23050

1

1

1

1

1

0

PCBER1; phenylcoumaran benzylic ether reductase

K23570

1

1

1

1

1

1

EMC10; ER membrane protein complex subunit 10

  1. HL0 Halo leaf control, VL0 Vernal leaf control, HL3 Halo leaf after 3 h of salt stress, VL3 Vernal leaf after 3 h of salt stress, HL27 Halo leaf after 27 h of salt stress, VL27 Vernal leaf after 27 h of salt stress, HR0 Halo root control, VR0 Vernal root control, HR3 Halo root after 3 h of salt stress, VR3 Vernal root after 3 h of salt stress, HR27 Halo root after 27 h of salt stress, VR27 Vernal root after 27 h of salt stress