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Table 1 Novel miRNAs identified in grape berries of stone hardening stage

From: Identification of miRNAs-mediated seed and stone-hardening regulatory networks and their signal pathway of GA-induced seedless berries in grapevine (V. vinifera L.)

Id

location

mfe

Id(5p)

Id(3p)

count(5p)

count(3p)

seq(5p)

VvmiR1

chr10:4660933:4661043:+

−49.4

–

â–²

–

15

–

VvmiR2

chr10:16154669:16154760:+

−54

â–²

–

58

–

UCAGCGGCUGAGAUAAGCAAA

VvmiR3

chr12:836885:836996:-

−29.4

–

â–²

–

6

–

VvmiR4

chr12:1137532:1137662:-

−32.3

–

â–²

–

5

–

VvmiR5

chr12:17324634:17324749:-

−27.7

–

â–²

–

5

–

VvmiR6

chr12:20076549:20076639:-

−26.3

–

â–²

–

20

–

VvmiR7

chr13:20001280:20001472:+

−47.7

–

â–²

–

10

–

VvmiR8

chr13:20934176:20934434:-

−64.1

â–²

–

8

–

UCCAAGGAUGGAAAAGGCUUC

VvmiR9

chr13_random:2451486:2451802:-

−78.6

–

â–²

–

7

–

VvmiR10

chr14:10959011:10959186:+

−20.55

â–²

–

1447

–

CUAGAGAUUGUGGAUUAGGCU

VvmiR11*/VvmiR11

chr14:22335449:22335595:+

−70

â–³

â–²

1

12

UUCUCAGCUACUAAUAUCAAG

VvmiR12

chr14:1713283:1713430:-

−46.7

â–²

–

47

–

CACGGAAGUGGAGCGGGCGGGCG

VvmiR13/VvmiR13*

chr14:19755471:19755583:-

−57.9

â–²

â–²

13,748

1332

GGAAUGGGCUGAUUGGGAUA

VvmiR14

chr14:22697840:22697962:-

−37.7

â–²

–

23

–

UCAGCUGGGUUGGCAUCUGAA

VvmiR15/VvmiR15*

chr14:24560621:24560731:-

−54.7

â–²

â–³

13

3

UCUGAACUCUCUCCCUCAUGGC

VvmiR16

chr15:6122847:6123043:-

−50.53

â–²

–

7

–

UCUUUUCUUGAUAGAAGGCCU

VvmiR17

chr16:2126040:2126238:-

−38.7

â–²

–

77

–

AUACCAUGUGGAAAAGAGGAAUC

VvmiR18

chr16:3111476:3111566:-

−51.7

–

â–²

–

5

–

VvmiR19

chr16:17808410:17808741:-

−79

â–²

–

41

–

UGCGGGUGGAAGAGAAGGAAG

VvmiR20

chr16:19208159:19208370:-

−67.7

–

â–²

–

11

–

VvmiR21

chr17:4716715:4716853:+

−44.23

–

â–²

–

10

–

VvmiR22

chr17:9575775:9575974:+

−57.7

â–²

–

5

–

CGACGGCAAGGACACUUUCGU

VvmiR23

chr17:7265156:7265271:-

−43.9

–

â–²

–

19

–

VvmiR24*/VvmiR24

chr18:4079210:4079312:+

−71.9

â–³

â–²

2

93

GACAAGUUACAUACAUCCAAG

VvmiR25

chr18:29129189:29129421:+

−68.2

â–²

–

17

–

UCCUUCGGCGUCGGCAAAUCC

VvmiR26

chr18_random:4558402:4558602:+

−51.3

–

â–²

–

9

–

VvmiR27/VvmiR27*

chr19:607159:607251:+

−21.75

â–²

â–³

22

1

UUUGAUCAGAUAUUGGAUUGC

VvmiR28

chr19:5046231:5046495:+

−67.97

â–²

–

17

–

CAGGACUGGCAGUGAUGGUUA

VvmiR29*/VvmiR29

chr19:13510105:13510195:+

−44.7

â–³

â–²

1

8174

UCCCUCAAAGGCUUCCAAUUU

VvmiR30

chr19:18678400:18678570:+

−51.9

â–²

–

10,199

–

GUUGGAAGUCGGUGGGGGAAC

VvmiR31

chr19:21910338:21910598:+

−54.19

–

â–²

–

7

–

VvmiR32

chr19:580958:581064:-

−21

–

â–²

–

28

–

VvmiR33

chr19:5446765:5447061:-

−68.9

–

â–²

–

8

–

VvmiR34

chr19:18872600:18872761:-

−50

â–²

–

1615

–

GUUGGAAGUCGGUGGGGGACC

VvmiR35

chr19:20383158:20383366:-

−66.7

â–²

–

10

–

UGCUGAGUCAGUGAUGGUAGG

VvmiR36

chr19:22103176:22103318:-

−35.7

â–²

–

11

–

UGGGCUUGUGGAGAAGAAAGUGA

VvmiR37/VvmiR37*

chr1:3865565:3865681:+

−46.2

â–²

â–³

37,985

2588

CAUGGGCGGUUUGGUAAGAGG

VvmiR38*/VvmiR38

chr2:1237534:1237664:+

−64.9

â–³

â–²

17

629

ACUCUCCCUCAAGGGCUUCUG

VvmiR39

chr5:6017515:6017763:-

−98.3

â–²

–

10

–

CAGCAGUUGCUAUUGUGGUUG

VvmiR40

chr5:19124470:19124728:-

−65.6

–

â–²

–

15

–

VvmiR41

chr5:22090345:22090434:-

−37.9

–

â–²

–

9

–

VvmiR42

chr5:23402211:23402278:-

−27.1

â–²

–

10

–

CUGAACAGAACUGAGGACAGU

VvmiR43*/VvmiR43

chr5:24742118:24742235:-

−45.5

â–³

â–²

13

2793

UUUUGUUGCUGGUCAUCUAGUC

VvmiR44/VvnuR44*

chr6:17896119:17896283:+

−75.22

â–³

â–²

61

38

UGCAUUUGCACCUGCACCUUA

VvmiR45

chr6:777459:777636:-

−30.5

–

â–²

–

61

–

VvmiR46

chr6:6489357:6489602:-

−103.01

â–²

–

22

–

CACUCCCUCGAGCUCGUCGGC

VvmiR47

chr7:19450050:19450214:+

−49.6

–

â–²

–

10

–

VvmiR48

chr7:2818487:2818617:-

−40.23

–

â–²

–

6

–

VvmiR49

chr7:3130346:3130460:-

−26.9

–

â–²

–

15

–

VvmiR50

chr7:3926329:3926600:-

−92.68

–

â–²

–

5

–

VvmiR51

chr7:11137979:11138169:-

−42.6

â–²

–

12

–

UCUGACGUAUAUGCUGAUGGA

VvmiR52

chr7_random:1422270:1422383:-

−52.2

â–²

–

45

–

UGACAAAGAGAGAGAGCACAC

VvmiR53*/VvmiR53

chr8:2139178:2139403:+

−108.2

â–³

â–²

3

23

GGGUAGUAUGCUGCUGUCUU

VvmiR54

chr8:22308229:22308469:+

−68.25

â–²

–

14

–

AUGUAUUUGAGGGAAAGCAAA

VvmiR55

chr8:14593879:14594080:-

−98.9

â–²

–

87

–

CCGAGGGAGAGAGCGAGAGGA

VvmiR56

chr8:16138745:16139039:-

−84.2

–

â–²

–

8

–

VvmiR57

chr8:18999725:18999889:-

−57.1

â–²

–

24

–

UCUGCAUUUGCACCUGCACCU

VvmiR58

chr8:19904186:19904332:-

−42.5

â–²

–

11

–

CACAUAUAAUUUUUUCCCGUCA

VvmiR59

chr8:19949160:19949307:-

−45.7

â–²

–

11

–

CACAUAUAAUUUUUUCCCGUCA

VvmiR60

chr8:20492988:20493218:-

−60.2

–

â–²

–

10

–

VvmiR61

chr8:21905817:21906095:-

−100

â–²

–

159

–

CAUCGUCCGAGGCUAUGGCGG

VvmiR62

chr9:406257:406420:+

−73.5

â–²

–

9

–

UCUGUUGGGACGUCAUUUGUU

VvmiR63

chr9:1040473:1040614:+

−48.5

â–²

–

22

–

CCUUGGCUGUUGGAGAGGAUA

VvmiR64

chr9:11237291:11237395:-

−28.8

â–²

–

25

–

UGAUAGAUUAAGGUACCUCAA

VvmiR65

chrUn:11785723:11785836:+

−51.3

â–²

–

45

–

UGACAAAGAGAGAGAGCACAC

VvmiR66

chrUn:11820795:11820908:+

−50.1

â–²

–

45

–

UGACAAAGAGAGAGAGCACAC

VvmiR67

chrUn:20798908:20799202:+

−69.53

–

â–²

–

8

–

VvmiR68

chrUn:10241355:10241468:-

−52.2

â–²

–

45

–

UGACAAAGAGAGAGAGCACAC

VvmiR69

chrUn:10268710:10268823:-

−52.2

â–²

–

45

–

UGACAAAGAGAGAGAGCACAC

VvmiR70

chrUn:10281947:10282060:-

−51

â–²

–

45

–

UGACAAAGAGAGAGAGCACAC

VvmiR71*/VvmiR71

chrUn:16672978:16673068:-

−45.5

â–³

â–²

1

8174

UCCCUCAAAGGCUUCCAAUUU

VvmiR72

chrUn:25396495:25396608:-

−52.2

â–²

–

45

–

UGACAAAGAGAGAGAGCACAC

  1. ▲ denotes VvmiRNA; △ represents VvmiRNA*; − indicates no
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BMC Plant Biology

ISSN: 1471-2229

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