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Table. 1 Functional description and expression changes of the DNB genes which crucial for defense transition

From: Genome-wide dynamic network analysis reveals the potential genes for MeJA-induced growth-to-defense transition

DNB Genes

Fold Change

Gene Description

Transcription factor

 bZIP63

25.81 b

BASIC LEUCINE ZIPPER protein which regulates the circadian oscillator gene PRR7 to change the circadian phase in response to sugars.

 HAT22

2.34 a

Encodes homeobox protein HAT22, member of the HD-Zip II family. The mRNA is cell-to-cell mobile.

 ERF043

3.33 a

Encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family.

 CRF6

4.15 a

CRF6 encodes one of the six cytokinin response factors.

 BPC1

2.83

BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK).

 MYB3R-5

1.65

Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family.

 AT5G26865

1.27

AGAMOUS-like MADS-box protein

 AT3G58630

1.08

sequence-specific DNA binding transcription factor

Response to stress

 TCH3

5.68 b

Encodes a calmodulin-like protein, with six potential calcium binding domains. Expression may also be developmentally controlled.

 ERD15

3.77 b

Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria.

 TMAC2

21.70 b

Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses.

 AGB1

1.78 b

Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER.

 AT1G03610

2.95 b

plant/protein (DUF789)

 CINV1

1.85 b

CINV1 is an alkaline/neutral invertase that breaks sucrose down into fructose and glucose (GH100).

 PP2-A13

4.52 b

phloem protein 2-A13

 AT4G26750

1.87 b

Encodes a protein involved in mediating plant responses to pathogenesis.

 PLIP2

9.32 b

PLIP2 is a glycerolipid A1 lipase with substrate preference for monogalactosyldiacylglycerol. Expression is induced by ABA.

 SAP2

4.65 b

Eukaryotic aspartyl protease family protein

 KPI-1

2.11 a

Encodes a Kazal-type serine proteinase inhibitor that is highly expressed in seedlings and flowers.

 ACBP3

5.07 a

acyl-CoA-binding protein ACBP3. Shows up-regulation of many biotic and abiotic stress related genes.

 SYP121

2.19

Encodes a syntaxin localized at the plasma membrane. SYR121/PEN1 is a member of the SNARE superfamily and functions in positioning anchoring of the KAT1 K + channel protein at the plasma membrane.

 ERD14

1.52

Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress.

 MBL1

6.81

curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays; contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein.

 AT1G19310

1.51

RING/U-box superfamily protein

 UGT76C2

1.78

Encodes a cytokinin N-glucosyltransferase that is involved in cytokinin homeostasis and cytokinin. Expression is induced by ABA, mannitol and drought stress.

 SAG21

3.18

Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Elevated in response to various stresses.

 SGT1A

1.39

Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes.

 ASAP1

5.62

NSE5 subunit of the SMC5/6 complex.

 EAP3

1.80

EAP3 is a cytolsolic BTB/POZ-domain protein involved in trafficking of PEN3.

 RMA1

1.98

RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.

 SYP42

1.63

Encodes a member of SYP4 Gene Family that is a plant ortholog of the Tlg2/syntaxin16 Qa-SNARE. Together with SYP43, it regulates the secretory and vacuolar transport pathways in the post-Golgi network.

 NTAQ1

0.77

Controls the expression of specific defence-response genes, activates the synthesis pathway for the phytoalexin camalexin and influences basal resistance to Pseudomonas syringae pv tomato (Pst).

Negative regulation of growth

 TOPP9

4.35 b

Encodes a Type One Protein Phosphatase that acts as a nucleocytoplasmic negative regulator of tip growth.

 CDPK2

7.21 b

Encodes a Ca(2+)-dependent, calmodulin-independent protein kinase that is rapidly induced by drought and high-salt stress. Positive regulator of ABA signaling.

  1. a indicates significance at 0.05 level b indicates significance at the 0.01 level