Skip to main content

Table 1 Principal Characteristics of QTL for SPC in six tested environments

From: Genetic mapping high protein content QTL from soybean ‘Nanxiadou 25’ and candidate gene analysis

Environment QTL name Chromosome Position (bp) Physical Region (bp) LOD R2 Additive effect PVE (%)
2017LS qSPC_03 Gm03 15,202,009 14,778,473–16,144,154 3.13 2.61 0.23 71.01
qSPC_06 Gm06 26,103,041 26,048,656–27,047,960 3.53 6.26 0.5  
qSPC_06 Gm06 51,046,599 49,177,878–51,255,865 4.13 4.83 0.35  
qSPC_07 Gm07 40,736,523 40,573,526–40,801,871 5.14 9.25 −0.6  
qSPC_08 Gm08 46,138,625 44,345,029–47,400,674 2.68 4.86 −0.41  
qSPC_15 Gm15 28,480,017 27,758,348–28,637,600 4.49 14.2 −0.71  
qSPC_15 Gm15 31,460,738 30,932,029–32,480,047 7.56 8.87 −0.56  
qSPC_20–1 Gm20 32,752,215 29,941,825–33,575,096 6.97 9.99 0.54  
qSPC_20–2 Gm20 35,324,637 34,001,651–36,397,119 6.94 10.14 0.55  
2017NC qSPC_01 Gm01 31,005,638 30,066,989–31,278,484 2.91 3.28 −0.44 75.93
qSPC_07 Gm07 40,736,523 40,573,526–40,801,871 3.66 5.94 −0.54  
qSPC_09 Gm09 30,262,482 29,336,980–31,646,725 3.71 5.08 0.38  
qSPC_09 Gm09 34,189,648 33,514,884–34,644,806 3.26 4.49 0.31  
qSPC_10 Gm10 15,015,727 13,820,762–17,377,372 3.48 5.8 0.64  
qSPC_10 Gm10 22,505,497 21,845,895–22,873,926 6.77 11.52 1.16  
qSPC_15 Gm15 28,480,017 27,758,348–28,637,600 6.41 11.7 −0.69  
qSPC_16 Gm16 6,616,428 6,570,336–6,706,066 3.24 4.86 −0.45  
qSPC_20–1 Gm20 32,752,215 30,262,326–33,575,096 8.02 11.07 0.59  
qSPC_20–2 Gm20 35,320,625 34,001,651–35,324,637 8 12.19 0.65  
2018LS qSPC_03 Gm03 15,202,009 14,808,506–15,561,956 3.02 1.58 0.16 40.19
qSPC_15 Gm15 28,480,017 27,758,348–28,637,600 4.06 7.71 −0.56  
qSPC_20–1 Gm20 32,752,215 30,215,156–33,722,368 8.26 13.83 0.66  
qSPC_20–2 Gm20 35,320,625 34,001,651–35,324,637 9.04 17.07 0.76  
2018NC qSPC_01 Gm01 31,005,638 30,066,989–31,278,484 2.83 4.09 −0.45 81.08
qSPC_02 Gm02 2,676,772 1,853,600–3,366,836 3.21 1.84 0.19  
qSPC_02 Gm02 7,669,124 6,198,717–8,753,999 3.49 2.47 0.23  
qSPC_03 Gm03 323,364 204,043–561,263 3.49 1.44 −0.37  
qSPC_03 Gm03 15,202,009 14,778,473–15,561,956 3.79 1.38 0.15  
qSPC_05 Gm05 7,963,945 7,788,051–7,989,411 2.9 2.02 0.2  
qSPC_09 Gm09 34,189,648 33,092,853–34,644,806 3.21 3.49 0.26  
qSPC_13 Gm13 885,796 141,952–2,463,480 3.27 3.42 0.29  
qSPC_15 Gm15 28,480,017 27,849,290–28,637,600 3.75 8.15 −0.58  
qSPC_15 Gm15 49,230,170 48,924,129–49,330,218 4.91 1.22 −0.28  
qSPC_16 Gm16 6,616,428 6,570,336–6,706,066 3.13 4.67 −0.45  
qSPC_20 Gm20 32,752,215 30,262,326–33,722,368 9.25 12.54 0.63  
qSPC_20–1 Gm20 35,320,625 34,001,651–35,324,637 8.43 17.5 0.76  
qSPC_20–2 Gm20 35,364,671 35,363,119–36,473,914 10.6 16.85 0.77  
2019LS qSPC_01 Gm01 28,817,299 28,625,066–30,066,989 4.08 7.65 −0.56 69.77
qSPC_11 Gm11 10,518,944 10,183,893–11,819,989 4.25 6.54 0.55  
qSPC_15 Gm15 28,480,017 27,849,290–28,637,600 3.35 8.56 −0.58  
qSPC_15 Gm15 31,460,738 30,932,029–32,085,742 4.77 6.74 −0.5  
qSPC_20 Gm20 32,752,215 30,262,326–33,575,096 7.81 11.83 0.62  
qSPC_20–1 Gm20 35,089,898 33,744,434–34,286,637 8.45 13.51 0.64  
qSPC_20–2 Gm20 35,320,625 34,133,367–36,374,707 8.81 14.94 0.7  
2019NC qSPC_03 Gm03 323,364 0–561,263 3.31 1.41 −0.34 40.98
qSPC_15 Gm15 28,480,017 27,849,290–28,637,600 3.33 7.57 −0.55  
qSPC_15 Gm15 31,460,738 30,932,029–32,600,478 4.18 6.57 −0.51  
qSPC_16 Gm16 6,616,428 6,570,336–6,706,066 3.54 4.98 −0.45  
qSPC_20–1 Gm20 32,752,215 29,558,474–33,575,096 6.5 9.77 0.57  
qSPC_20–2 Gm20 35,324,637 33,744,434–35,514,013 6.96 10.68 0.6