Genetic mapping high protein content QTL from soybean ‘Nanxiadou 25’ and candidate gene analysis

Wang, Jia; Mao, Lin; Zeng, Zhaoqiong; Yu, Xiaobo; Lian, Jianqiu; Feng, Jun; Yang, Wenying; An, Jiangang; Wu, Haiying; Zhang, Mingrong; Liu, Liezhao

doi:10.1186/s12870-021-03176-2

BMC Plant Biology

Table 1 Principal Characteristics of QTL for SPC in six tested environments

From: Genetic mapping high protein content QTL from soybean ‘Nanxiadou 25’ and candidate gene analysis

Environment	QTL name	Chromosome	Position (bp)	Physical Region (bp)	LOD	R²	Additive effect	PVE (%)
2017LS	qSPC_03	Gm03	15,202,009	14,778,473–16,144,154	3.13	2.61	0.23	71.01
	qSPC_06	Gm06	26,103,041	26,048,656–27,047,960	3.53	6.26	0.5
	qSPC_06	Gm06	51,046,599	49,177,878–51,255,865	4.13	4.83	0.35
	qSPC_07	Gm07	40,736,523	40,573,526–40,801,871	5.14	9.25	−0.6
	qSPC_08	Gm08	46,138,625	44,345,029–47,400,674	2.68	4.86	−0.41
	qSPC_15	Gm15	28,480,017	27,758,348–28,637,600	4.49	14.2	−0.71
	qSPC_15	Gm15	31,460,738	30,932,029–32,480,047	7.56	8.87	−0.56
	qSPC_20–1	Gm20	32,752,215	29,941,825–33,575,096	6.97	9.99	0.54
	qSPC_20–2	Gm20	35,324,637	34,001,651–36,397,119	6.94	10.14	0.55
2017NC	qSPC_01	Gm01	31,005,638	30,066,989–31,278,484	2.91	3.28	−0.44	75.93
	qSPC_07	Gm07	40,736,523	40,573,526–40,801,871	3.66	5.94	−0.54
	qSPC_09	Gm09	30,262,482	29,336,980–31,646,725	3.71	5.08	0.38
	qSPC_09	Gm09	34,189,648	33,514,884–34,644,806	3.26	4.49	0.31
	qSPC_10	Gm10	15,015,727	13,820,762–17,377,372	3.48	5.8	0.64
	qSPC_10	Gm10	22,505,497	21,845,895–22,873,926	6.77	11.52	1.16
	qSPC_15	Gm15	28,480,017	27,758,348–28,637,600	6.41	11.7	−0.69
	qSPC_16	Gm16	6,616,428	6,570,336–6,706,066	3.24	4.86	−0.45
	qSPC_20–1	Gm20	32,752,215	30,262,326–33,575,096	8.02	11.07	0.59
	qSPC_20–2	Gm20	35,320,625	34,001,651–35,324,637	8	12.19	0.65
2018LS	qSPC_03	Gm03	15,202,009	14,808,506–15,561,956	3.02	1.58	0.16	40.19
	qSPC_15	Gm15	28,480,017	27,758,348–28,637,600	4.06	7.71	−0.56
	qSPC_20–1	Gm20	32,752,215	30,215,156–33,722,368	8.26	13.83	0.66
	qSPC_20–2	Gm20	35,320,625	34,001,651–35,324,637	9.04	17.07	0.76
2018NC	qSPC_01	Gm01	31,005,638	30,066,989–31,278,484	2.83	4.09	−0.45	81.08
	qSPC_02	Gm02	2,676,772	1,853,600–3,366,836	3.21	1.84	0.19
	qSPC_02	Gm02	7,669,124	6,198,717–8,753,999	3.49	2.47	0.23
	qSPC_03	Gm03	323,364	204,043–561,263	3.49	1.44	−0.37
	qSPC_03	Gm03	15,202,009	14,778,473–15,561,956	3.79	1.38	0.15
	qSPC_05	Gm05	7,963,945	7,788,051–7,989,411	2.9	2.02	0.2
	qSPC_09	Gm09	34,189,648	33,092,853–34,644,806	3.21	3.49	0.26
	qSPC_13	Gm13	885,796	141,952–2,463,480	3.27	3.42	0.29
	qSPC_15	Gm15	28,480,017	27,849,290–28,637,600	3.75	8.15	−0.58
	qSPC_15	Gm15	49,230,170	48,924,129–49,330,218	4.91	1.22	−0.28
	qSPC_16	Gm16	6,616,428	6,570,336–6,706,066	3.13	4.67	−0.45
	qSPC_20	Gm20	32,752,215	30,262,326–33,722,368	9.25	12.54	0.63
	qSPC_20–1	Gm20	35,320,625	34,001,651–35,324,637	8.43	17.5	0.76
	qSPC_20–2	Gm20	35,364,671	35,363,119–36,473,914	10.6	16.85	0.77
2019LS	qSPC_01	Gm01	28,817,299	28,625,066–30,066,989	4.08	7.65	−0.56	69.77
	qSPC_11	Gm11	10,518,944	10,183,893–11,819,989	4.25	6.54	0.55
	qSPC_15	Gm15	28,480,017	27,849,290–28,637,600	3.35	8.56	−0.58
	qSPC_15	Gm15	31,460,738	30,932,029–32,085,742	4.77	6.74	−0.5
	qSPC_20	Gm20	32,752,215	30,262,326–33,575,096	7.81	11.83	0.62
	qSPC_20–1	Gm20	35,089,898	33,744,434–34,286,637	8.45	13.51	0.64
	qSPC_20–2	Gm20	35,320,625	34,133,367–36,374,707	8.81	14.94	0.7
2019NC	qSPC_03	Gm03	323,364	0–561,263	3.31	1.41	−0.34	40.98
	qSPC_15	Gm15	28,480,017	27,849,290–28,637,600	3.33	7.57	−0.55
	qSPC_15	Gm15	31,460,738	30,932,029–32,600,478	4.18	6.57	−0.51
	qSPC_16	Gm16	6,616,428	6,570,336–6,706,066	3.54	4.98	−0.45
	qSPC_20–1	Gm20	32,752,215	29,558,474–33,575,096	6.5	9.77	0.57
	qSPC_20–2	Gm20	35,324,637	33,744,434–35,514,013	6.96	10.68	0.6

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