Skip to main content

Table 1 Overview and comparison of CBL genes in S. bicolor and S. spontaneum

From: Comparative phylogenetic analysis of CBL reveals the gene family evolution and functional divergence in Saccharum spontaneum

S. bicolor S. spontaneum Similaritye
Gene Chr.a Aab No. of exon Mwc (kDa) P.L.d Gene Clade Chr.a Aab No. of exon Mwc (kDa) P.L.d
Sobic.001G294300 1 213 8 25.11 PM SsCBL01 III 1 213 8 24.49 PM 100.00%
Sobic.008G152800 8 225 8 25.84 PM/Tono SsCBL02 IV 2 225 8 25.84 PM/Tono 97.35%
NA NA NA NA NA NA SsCBL03 IV 1 225 8 25.77 PM/Tono NA
Sobic.009G210300 9 212 8 24.05 PM SsCBL04 I 7 211 8 24.11 PM/Cyto 78.54%
Sobic.003G208400 3 218 8 25.82 PM/Cyto SsCBL05 I 3 220 8 25.66 PM/Cyto 96.98%
Sobic.008G046500 8 223 8 25.68 PM SsCBL06 IV 7 223 8 25.68 PM 99.11%
Sobic.004G130600 4 213 8 24.39 PM/Cyto SsCBL08 I 4 213 8 24.34 PM/Cyto 99.07%
Sobic.003G196400 3 319 9 35.87 PM SsCBL09 II 3 294 9 33.11 PM 94.59%
Sobic.003G275000 3 283 8 32.29 PM/Tono SsCBL10 II 3 288 8 32.4 PM/Tono 87.59%
  1. PM plasma membrane, Tono tonoplast, Cyto cytoplasm.
  2. aChromosome carrying the target gene
  3. bNumber of amino acids of CBL protein sequence
  4. cPrediction of Molecular weight (Mw) through ExPASy (https://web.expasy.org/compute_pi/)
  5. dSubcellular location of the HAK proteins predicted with WoLF PSORT (https://www.genscript.com/wolf-psort.html)
  6. eSimilarity of protein sequence between S. spontaneum and sorghum determined by BLASTP