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Table 2 Sorghum SNPs showing significant genome-wide associations with S. hermonthica resistance determined using traits of mean number of attachments, mean length and mean biomass (FDR correction at ∝0.05). SNPs within genes are presented with their annotations in order of chromosomal location. AF: allele frequency; AdjP: P-value after FDR adjustment. *represent SNPs common to QTL detected in Haussmann et al., 2004). Letters after SNP positions represent trait to detect the SNP: a = attachment, b = length, c = biomass

From: GWAS provides biological insights into mechanisms of the parasitic plant (Striga) resistance in sorghum

Chr

Position

AF

AdjP

Gene ID

Annotation

1

66423166c*

0.25

3.03E-03

Sobic.001G375900

Hypothetical protein

1

66995004a*

0.38

2.20E-02

Sobic.001G382000

Serine/threonine-protein kinase AtPK19

2

1990072a*

0.5

3.00E-03

Sobic.002G021700

F-box proteins

2

10791041a*

0.17

3.99E-04

N/A

N/A

2

61226505a*

0.18

2.90E-03

Sobic.002G220700

Uncharacterized protein

2

75881569a*

0.14

2.90E-03

N/A

N/A

2

69292723a*

0.17

5.29E-05

Sobic.002G321300

ABCG transporter

2

59157949b*

0.46

2.52E-04

Sobic.002G201600

PMT2 Methyltransferase

3

58064948a

0.13

4.00E-03

Sobic.003G241300

Isoflavon reductase

4

3830076b

0.09

2.83E-03

obic.004G047001

NA

4

50695987a

0.31

4.00E-04

N/A

Ethylene responsive element binding factor 4

4

52466133b

0.45

5.12E-02

N/A

Uncharacterized protein

4

64068558c

0.1

2.00E-05

Sobic.004G020200

Cytosine-5- -Methyltransferase 3-Related

4

51292838c

0.14

1.84E-03

Sobic.004G163700

N/A

4

53412080b

0.43

1.69E-02

Sobic.004G181500

DNA repair protein

4

438979c

0.43

2.57E-03

Sobic.004G005100

Zinc finger with peptidase domain protein

4

5610661b

0.13

6.98E-03

Sobic.004G068800

N/A

4

50512606b

0.17

1.89E-05

Sobic.004G158901

Ethylene-responsive transcription factor ERF113

5

1591316c

0.12

3.28E-03

Sobic.005G017700

Hypothetical protein

5

33845800c

0.07

1.00E-03

N/A

N/A

5

37742821c

0.06

7.48E-05

N/A

N/A

5

52091605c

0.13

1.92E-04

N/A

N/A

5

16194394c

0.27

1.96E-03

Sobic.005G099000

Xylanase inhibitor 1

6

6412692b

0.25

3.31E-02

N/A

N/A

6

28486530b

0.38

3.31E-02

N/A

N/A

6

35866190b

0.48

5.20E-02

N/A

N/A

6

45280156b

0.16

2.46E-05

N/A

Hypothetical protein

6

52535510b

0.24

4.94E-02

N/A

N/A

6

60968111b

0.29

5.85E-03

N/A

Secondary wall NAC transcription factor 4

6

1389246b

0.33

4.90E-02

Sobic.006G009400

Peroxiredoxin1 (Prx1)

6

54417370b

0.2

3.54E-04

Sobic.006G190000

Downy mildew resistant 6 (DMR6)

7

413066a

0.12

4.40E-02

Sobic.007G004500

HSP60

7

7777464b

0.24

2.99E-02

Sobic.007G070000

Uncharacterized protein

7

8351776b

0.22

4.50E-04

N/A

N/A

7

16156498b

0.08

2.52E-04

N/A

N/A

7

51452375b

0.13

7.49E-14

N/A

N/A

7

51462880b

0.18

7.49E-14

N/A

N/A

9

5732771a*

0.39

1.80E-03

Sobic.009G056400

Fasciclin-like arabinogalactan protein 11

10

2576197b

0.19

3.02E-02

Sobic.010G032000

Early nodulin 93

10

3821956b*

0.07

1.15E-07

Sobic.010G049100

Acyl coa oxidase 1

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BMC Plant Biology

ISSN: 1471-2229

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