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Table 2 Sorghum SNPs showing significant genome-wide associations with S. hermonthica resistance determined using traits of mean number of attachments, mean length and mean biomass (FDR correction at 0.05). SNPs within genes are presented with their annotations in order of chromosomal location. AF: allele frequency; AdjP: P-value after FDR adjustment. *represent SNPs common to QTL detected in Haussmann et al., 2004). Letters after SNP positions represent trait to detect the SNP: a = attachment, b = length, c = biomass

From: GWAS provides biological insights into mechanisms of the parasitic plant (Striga) resistance in sorghum

Chr Position AF AdjP Gene ID Annotation
1 66423166c* 0.25 3.03E-03 Sobic.001G375900 Hypothetical protein
1 66995004a* 0.38 2.20E-02 Sobic.001G382000 Serine/threonine-protein kinase AtPK19
2 1990072a* 0.5 3.00E-03 Sobic.002G021700 F-box proteins
2 10791041a* 0.17 3.99E-04 N/A N/A
2 61226505a* 0.18 2.90E-03 Sobic.002G220700 Uncharacterized protein
2 75881569a* 0.14 2.90E-03 N/A N/A
2 69292723a* 0.17 5.29E-05 Sobic.002G321300 ABCG transporter
2 59157949b* 0.46 2.52E-04 Sobic.002G201600 PMT2 Methyltransferase
3 58064948a 0.13 4.00E-03 Sobic.003G241300 Isoflavon reductase
4 3830076b 0.09 2.83E-03 obic.004G047001 NA
4 50695987a 0.31 4.00E-04 N/A Ethylene responsive element binding factor 4
4 52466133b 0.45 5.12E-02 N/A Uncharacterized protein
4 64068558c 0.1 2.00E-05 Sobic.004G020200 Cytosine-5- -Methyltransferase 3-Related
4 51292838c 0.14 1.84E-03 Sobic.004G163700 N/A
4 53412080b 0.43 1.69E-02 Sobic.004G181500 DNA repair protein
4 438979c 0.43 2.57E-03 Sobic.004G005100 Zinc finger with peptidase domain protein
4 5610661b 0.13 6.98E-03 Sobic.004G068800 N/A
4 50512606b 0.17 1.89E-05 Sobic.004G158901 Ethylene-responsive transcription factor ERF113
5 1591316c 0.12 3.28E-03 Sobic.005G017700 Hypothetical protein
5 33845800c 0.07 1.00E-03 N/A N/A
5 37742821c 0.06 7.48E-05 N/A N/A
5 52091605c 0.13 1.92E-04 N/A N/A
5 16194394c 0.27 1.96E-03 Sobic.005G099000 Xylanase inhibitor 1
6 6412692b 0.25 3.31E-02 N/A N/A
6 28486530b 0.38 3.31E-02 N/A N/A
6 35866190b 0.48 5.20E-02 N/A N/A
6 45280156b 0.16 2.46E-05 N/A Hypothetical protein
6 52535510b 0.24 4.94E-02 N/A N/A
6 60968111b 0.29 5.85E-03 N/A Secondary wall NAC transcription factor 4
6 1389246b 0.33 4.90E-02 Sobic.006G009400 Peroxiredoxin1 (Prx1)
6 54417370b 0.2 3.54E-04 Sobic.006G190000 Downy mildew resistant 6 (DMR6)
7 413066a 0.12 4.40E-02 Sobic.007G004500 HSP60
7 7777464b 0.24 2.99E-02 Sobic.007G070000 Uncharacterized protein
7 8351776b 0.22 4.50E-04 N/A N/A
7 16156498b 0.08 2.52E-04 N/A N/A
7 51452375b 0.13 7.49E-14 N/A N/A
7 51462880b 0.18 7.49E-14 N/A N/A
9 5732771a* 0.39 1.80E-03 Sobic.009G056400 Fasciclin-like arabinogalactan protein 11
10 2576197b 0.19 3.02E-02 Sobic.010G032000 Early nodulin 93
10 3821956b* 0.07 1.15E-07 Sobic.010G049100 Acyl coa oxidase 1