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Table 2 Sorghum SNPs showing significant genome-wide associations with S. hermonthica resistance determined using traits of mean number of attachments, mean length and mean biomass (FDR correction at ∝0.05). SNPs within genes are presented with their annotations in order of chromosomal location. AF: allele frequency; AdjP: P-value after FDR adjustment. *represent SNPs common to QTL detected in Haussmann et al., 2004). Letters after SNP positions represent trait to detect the SNP: a = attachment, b = length, c = biomass

From: GWAS provides biological insights into mechanisms of the parasitic plant (Striga) resistance in sorghum

Chr Position AF AdjP Gene ID Annotation
1 66423166c* 0.25 3.03E-03 Sobic.001G375900 Hypothetical protein
1 66995004a* 0.38 2.20E-02 Sobic.001G382000 Serine/threonine-protein kinase AtPK19
2 1990072a* 0.5 3.00E-03 Sobic.002G021700 F-box proteins
2 10791041a* 0.17 3.99E-04 N/A N/A
2 61226505a* 0.18 2.90E-03 Sobic.002G220700 Uncharacterized protein
2 75881569a* 0.14 2.90E-03 N/A N/A
2 69292723a* 0.17 5.29E-05 Sobic.002G321300 ABCG transporter
2 59157949b* 0.46 2.52E-04 Sobic.002G201600 PMT2 Methyltransferase
3 58064948a 0.13 4.00E-03 Sobic.003G241300 Isoflavon reductase
4 3830076b 0.09 2.83E-03 obic.004G047001 NA
4 50695987a 0.31 4.00E-04 N/A Ethylene responsive element binding factor 4
4 52466133b 0.45 5.12E-02 N/A Uncharacterized protein
4 64068558c 0.1 2.00E-05 Sobic.004G020200 Cytosine-5- -Methyltransferase 3-Related
4 51292838c 0.14 1.84E-03 Sobic.004G163700 N/A
4 53412080b 0.43 1.69E-02 Sobic.004G181500 DNA repair protein
4 438979c 0.43 2.57E-03 Sobic.004G005100 Zinc finger with peptidase domain protein
4 5610661b 0.13 6.98E-03 Sobic.004G068800 N/A
4 50512606b 0.17 1.89E-05 Sobic.004G158901 Ethylene-responsive transcription factor ERF113
5 1591316c 0.12 3.28E-03 Sobic.005G017700 Hypothetical protein
5 33845800c 0.07 1.00E-03 N/A N/A
5 37742821c 0.06 7.48E-05 N/A N/A
5 52091605c 0.13 1.92E-04 N/A N/A
5 16194394c 0.27 1.96E-03 Sobic.005G099000 Xylanase inhibitor 1
6 6412692b 0.25 3.31E-02 N/A N/A
6 28486530b 0.38 3.31E-02 N/A N/A
6 35866190b 0.48 5.20E-02 N/A N/A
6 45280156b 0.16 2.46E-05 N/A Hypothetical protein
6 52535510b 0.24 4.94E-02 N/A N/A
6 60968111b 0.29 5.85E-03 N/A Secondary wall NAC transcription factor 4
6 1389246b 0.33 4.90E-02 Sobic.006G009400 Peroxiredoxin1 (Prx1)
6 54417370b 0.2 3.54E-04 Sobic.006G190000 Downy mildew resistant 6 (DMR6)
7 413066a 0.12 4.40E-02 Sobic.007G004500 HSP60
7 7777464b 0.24 2.99E-02 Sobic.007G070000 Uncharacterized protein
7 8351776b 0.22 4.50E-04 N/A N/A
7 16156498b 0.08 2.52E-04 N/A N/A
7 51452375b 0.13 7.49E-14 N/A N/A
7 51462880b 0.18 7.49E-14 N/A N/A
9 5732771a* 0.39 1.80E-03 Sobic.009G056400 Fasciclin-like arabinogalactan protein 11
10 2576197b 0.19 3.02E-02 Sobic.010G032000 Early nodulin 93
10 3821956b* 0.07 1.15E-07 Sobic.010G049100 Acyl coa oxidase 1
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BMC Plant Biology

ISSN: 1471-2229

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