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Table 1 Phenotype comparison between normal and Cd stress conditions

From: Loci and natural alleles for cadmium-mediated growth responses revealed by a genome wide association study and transcriptome analysis in rice

Traits Full population Indica
N G G/N P-value N G G/N P-value
SRL (cm) 495.4 286.3 0.60 6.62E-42 515.9 300.6 0.60 5.22E-21
RA (cm2) 16.28 9.13 0.59 2.50E-41 17.17 9.51 0.57 6.75E-21
SA (cm2) 48.55 27.01 0.59 7.51E-41 51.24 28.07 0.57 6.34E-21
RV (cm3) 0.502 0.256 0.55 2.28E-36 0.531 0.259 0.52 7.14E-21
RD (mm) 0.287 0.287 1.01 8.79E-01 0.287 0.280 0.98 5.78E-02
MRL (cm) 20.80 17.76 0.86 2.30E-17 20.42 17.36 0.86 1.19E-09
SL (cm) 37.16 25.08 0.68 5.35E-50 37.08 25.76 0.70 2.05E-18
SW (g) 0.173 0.113 0.69 1.37E-21 0.186 0.119 0.66 4.16E-11
RW (g) 0.044 0.025 0.61 1.32E-29 0.047 0.063 0.57 6.73E-01
Traits Temperate japonica Tropical japonica
N G G/N P-value N G G/N P-value
SRL (cm) 527.9 296.9 0.60 2.23E-15 435.0 243.5 0.58 1.31E-07
RA (cm2) 17.12 9.57 0.60 6.74E-15 14.53 7.90 0.56 2.35E-07
SA (cm2) 51.09 28.39 0.59 1.43E-14 43.29 23.40 0.56 3.07E-07
RV (cm3) 0.530 0.277 0.58 1.21E-11 0.463 0.229 0.52 1.58E-06
RD (mm) 0.290 0.293 1.02 6.30E-01 0.291 0.296 1.02 6.21E-01
MRL (cm) 21.19 18.29 0.87 2.24E-06 22.29 18.29 0.83 2.49E-03
SL (cm) 38.20 25.12 0.67 2.63E-20 37.22 24.44 0.66 3.48E-09
SW (g) 0.178 0.116 0.71 9.74E-09 0.150 0.098 0.71 4.16E-04
RW (g) 0.047 0.027 0.62 3.66E-10 0.038 0.023 0.65 2.50E-04
  1. N normal conditions, G Cd stress conditions, G/N the ratio of the value under Cd stress conditions versus the value under normal conditions. Significant differences between normal and Cd stress conditions were analyzed by Student’s t test in R