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Table 5 Enriched DEGs relative to phenolic acid metabolism in CC vs FC root tissues of Polygonatum odoratum

From: Physiological and transcriptomic analyses to reveal underlying phenolic acid action in consecutive monoculture problem of Polygonatum odoratum

Pathway Gene annotation DEGs |log2foldchange| Regulation
Pentose phosphate pathway FBP: fructose-1,6-biphospatase [EC:3.1.3.11] 60,288.238790 1.8774 +
   60,288.235250 1.6639 +
  PGD: 6-phosphogluconate dehydrogenase [EC:1.1.1.44] 60,288.211711 1.5588 +
  rpe: ribulose-phosphate 3-epimerase [EC:5.1.3.1] 60,288.218462 1.9319 +
  GPI: glucose-6-phosphate isomerase [EC:5.3.1.9] 60,288.243910 2.0490
Pentose and glucoronate interconversions SORD: L-iditol 2-dehydrogenase [EC:1.1.1.14] 60,288.223504 1.8309 +
   60,288.223506 1.6717 +
   60,288.218324 1.7043 +
Starch and sucrose metabolism malZ: α-glucosidase [EC:3.2.1.20] 60,288.201647 3.9725 +
  glgC: glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] 60,288.33753 3.1600
   60,288.33754 2.7498
   60,288.206885 2.1132
  E3.2.1.4: endoglucanase [EC:3.2.1.4] 60,288.14730 4.4889
   60,288.10931 5.5413
   60,288.10932 6.4114
   60,288.10933 6.1401
   60,288.10934 7.8762
   60,288.148605 1.8496
   60,288.148607 2.5051
   60,288.148608 1.9175
Phenylalanine, tyrosine and tryptophan biosynthesis aroK: shikimate kinase [EC:2.7.1.71] 60,288.274987 1.6112 +
   60,288.274989 2.4732 +
   60,288.241945 1.9399 +
  aroC: chorismate synthase [EC:4.2.3.5] 60,288.232788 1.6419 +
   60,288.230454 1.5993 +
   60,288.239452 1.8285 +
   60,288.239453 1.7613 +
   60,288.239454 1.8178 +
Tyrosine metabolism TYDC: tyrosine decarboxylase [EC:4.1.1.25] 60,288.348666 3.8613 +
   60,288.348669 4.0964 +
   60,288.198712 3.1611 +
  E1.10.3.1: polyphenol oxidase [EC:1.10.3.1] 60,288.244462 2.3452
   60,288.367167 2.5857
  1. Note: DEGs stands for differentially expressed genes. FC stands for first cropping, and CC stands for continuous cropping. + stands for up-regulation, and - stands for down-regulation